Annotation of bacteriophage genome sequences using DNA Master: an overview

WH Pope, D Jacobs-Sera - Bacteriophages: Methods and Protocols …, 2018 - Springer
Current sequencing technologies allow for the rapid and inexpensive sequencing of
complete bacteriophage genomes, using small quantities of nucleic acid as starting material …

Phages rarely encode antibiotic resistance genes: a cautionary tale for virome analyses

F Enault, A Briet, L Bouteille, S Roux… - The ISME …, 2017 - academic.oup.com
Antibiotic resistance genes (ARGs) are pervasive in gut microbiota, but it remains unclear
how often ARGs are transferred, particularly to pathogens. Traditionally, ARG spread is …

Soil viruses are underexplored players in ecosystem carbon processing

G Trubl, HB Jang, S Roux, JB Emerson, N Solonenko… - …, 2018 - Am Soc Microbiol
Rapidly thawing permafrost harbors∼ 30 to 50% of global soil carbon, and the fate of this
carbon remains unknown. Microorganisms will play a central role in its fate, and their viruses …

Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity

WH Pope, CA Bowman, DA Russell, D Jacobs-Sera… - elife, 2015 - elifesciences.org
The bacteriophage population is large, dynamic, ancient, and genetically diverse. Limited
genomic information shows that phage genomes are mosaic, and the genetic architecture of …

Genomic diversity of bacteriophages infecting Microbacterium spp

D Jacobs-Sera, LA Abad, RM Alvey, KR Anders… - PLoS …, 2020 - journals.plos.org
The bacteriophage population is vast, dynamic, old, and genetically diverse. The genomics
of phages that infect bacterial hosts in the phylum Actinobacteria show them to not only be …

Bacteriophage taxonomy: an evolving discipline

I Tolstoy, AM Kropinski, JR Brister - … Therapy: From Lab to Clinical Practice, 2018 - Springer
While taxonomy is an often-unappreciated branch of science it serves very important roles.
Bacteriophage taxonomy has evolved from a mainly morphology-based discipline …

Virion glycosylation influences mycobacteriophage immune recognition

KG Freeman, AC Robotham, OB Parks, L Abad… - Cell Host & Microbe, 2023 - cell.com
Glycosylation of eukaryotic virus particles is common and influences their uptake, trafficking,
and immune recognition. In contrast, glycosylation of bacteriophage particles has not been …

[PDF][PDF] Soil viruses are underexplored players in ecosystem carbon processing. mSystems 3: e00076-18

G Trubl, HB Jang, S Roux, JB Emerson, N Solonenko… - 2018 - researchgate.net
Rapidly thawing permafrost harbors 30 to 50% of global soil carbon, and the fate of this
carbon remains unknown. Microorganisms will play a central role in its fate, and their viruses …

[HTML][HTML] Bacteriophages as an alternative to conventional antibiotic use for the prevention or treatment of Paenibacillus larvae in honeybee hives

TS Brady, BD Merrill, JA Hilton, AM Payne… - Journal of invertebrate …, 2017 - Elsevier
American Foulbrood (AFB) is an infectious disease caused by the bacteria, Paenibacillus
larvae. P. larvae phages were isolated and tested to determine each phages' host range …

Tales of diversity: Genomic and morphological characteristics of forty-six Arthrobacter phages

KK Klyczek, JA Bonilla, D Jacobs-Sera, TL Adair… - PLoS …, 2017 - journals.plos.org
The vast bacteriophage population harbors an immense reservoir of genetic information.
Almost 2000 phage genomes have been sequenced from phages infecting hosts in the …