[HTML][HTML] Focus: microbiome: the hoops, hopes, and hypes of human microbiome research

EM Bik - The Yale journal of biology and medicine, 2016 - ncbi.nlm.nih.gov
Recent developments in sequencing methods and bioinformatics analysis tools have greatly
enabled the culture-independent analysis of complex microbial communities associated with …

A structural and functional elucidation of the rumen microbiome influenced by various diets and microenvironments

S Deusch, A Camarinha-Silva, J Conrad… - Frontiers in …, 2017 - frontiersin.org
The structure and function of the microbiome inhabiting the rumen are, amongst other
factors, mainly shaped by the animal's feed intake. Describing the influence of different diets …

The promise and challenge of cancer microbiome research

SS Manzoor, A Doedens, MB Burns - Genome biology, 2020 - Springer
Many microbial agents have been implicated as contributors to cancer genesis and
development, and the search to identify and characterize new cancer-related organisms is …

[HTML][HTML] Gut microbiota analysis results are highly dependent on the 16S rRNA gene target region, whereas the impact of DNA extraction is minor

A Rintala, S Pietilä, E Munukka, E Eerola… - Journal of …, 2017 - ncbi.nlm.nih.gov
Next-generation sequencing (NGS) is currently the method of choice for analyzing gut
microbiota composition. As gut microbiota composition is a potential future target for clinical …

Host genome influence on gut microbial composition and microbial prediction of complex traits in pigs

A Camarinha-Silva, M Maushammer, R Wellmann… - Genetics, 2017 - academic.oup.com
The aim of the present study was to analyze the interplay between gastrointestinal tract (GIT)
microbiota, host genetics, and complex traits in pigs using extended quantitative-genetic …

Microbial butyrate synthesis indicates therapeutic efficacy of azathioprine in IBD patients

M Effenberger, S Reider, S Waschina… - Journal of Crohn's …, 2021 - academic.oup.com
Abstract Background and Aims The microbial ecosystem seems to be an important player for
therapeutic intervenption in inflammatory bowel disease [IBD]. We assessed longitudinal …

Induction of mastitis by cow-to-mouse fecal and milk microbiota transplantation causes microbiome dysbiosis and genomic functional perturbation in mice

MN Hoque, MS Rahman, T Islam, M Sultana… - Animal microbiome, 2022 - Springer
Background Mastitis pathogenesis involves a wide range of opportunistic and apparently
resident microorganims including bacteria, viruses and archaea. In dairy animals, microbes …

Baseline gut microbiome composition predicts metformin therapy short-term efficacy in newly diagnosed type 2 diabetes patients

I Elbere, I Silamikelis, II Dindune, I Kalnina… - PLoS …, 2020 - journals.plos.org
Background The study was conducted to investigate the effects of metformin treatment on
the human gut microbiome's taxonomic and functional profile in the Latvian population, and …

[HTML][HTML] Effects of protease and phytase supplements on small intestinal microbiota and amino acid digestibility in broiler chickens

D Borda-Molina, T Zuber, W Siegert… - Poultry science, 2019 - Elsevier
The objective of this study was to determine the effects of protease origin and dosage on the
prececal (pc) amino acid (AA) digestibility and the influence on composition of the microbial …

Dietary changes in nutritional studies shape the structural and functional composition of the pigs' fecal microbiome—from days to weeks

B Tilocca, K Burbach, CME Heyer, LE Hoelzle… - Microbiome, 2017 - Springer
Background The possible impact of changes in diet composition on the intestinal
microbiome is mostly studied after some days of adaptation to the diet of interest. The …