Neuron tracing from light microscopy images: automation, deep learning and bench testing

Y Liu, G Wang, GA Ascoli, J Zhou, L Liu - Bioinformatics, 2022 - academic.oup.com
Motivation Large-scale neuronal morphologies are essential to neuronal typing, connectivity
characterization and brain modeling. It is widely accepted that automation is critical to the …

Semantic segmentation of microscopic neuroanatomical data by combining topological priors with encoder–decoder deep networks

S Banerjee, L Magee, D Wang, X Li, BX Huo… - Nature machine …, 2020 - nature.com
Understanding of neuronal circuitry at cellular resolution within the brain has relied on
neuron tracing methods that involve careful observation and interpretation by experienced …

Establishing neuroanatomical correspondences across mouse and marmoset brain structures

C Mezias, B Huo, M Bota, J Jayakumar… - Research …, 2024 - pmc.ncbi.nlm.nih.gov
Interest in the common marmoset is growing due to evolutionarily proximity to humans
compared to laboratory mice, necessitating a comparison of mouse and marmoset brain …

Minimum Monotone Tree Decomposition of Density Functions Defined on Graphs

L Magee, Y Wang - International Conference on Combinatorial …, 2023 - Springer
Monotone trees-trees with a function defined on their vertices that decreases the further
away from a root node one travels, are a natural model for a process that weakens the …