[HTML][HTML] Small extracellular vesicles in cancer

K Abhange, A Makler, Y Wen, N Ramnauth, W Mao… - Bioactive Materials, 2021 - Elsevier
Extracellular vesicles (EV) are lipid-bilayer enclosed vesicles in submicron size that are
released from cells. A variety of molecules, including proteins, DNA fragments, RNAs, lipids …

Epigenetic and “redoxogenetic” adaptation to physical exercise

Z Radak, L Pan, L Zhou, S Mozaffaritabar, Y Gu… - Free Radical Biology …, 2024 - Elsevier
Exercise-induced adaptation is achieved by altering the epigenetic landscape of the entire
genome leading to the expression of genes involved in various processes including …

Epigenetically reprogrammed methylation landscape drives the DNA self-assembly and serves as a universal cancer biomarker

AAI Sina, LG Carrascosa, Z Liang, YS Grewal… - Nature …, 2018 - nature.com
Epigenetic reprogramming in cancer genomes creates a distinct methylation landscape
encompassing clustered methylation at regulatory regions separated by large intergenic …

The physics of epigenetics

R Cortini, M Barbi, BR Caré, C Lavelle, A Lesne… - Reviews of Modern …, 2016 - APS
In higher organisms, all cells share the same genome, but every cell expresses only a
limited and specific set of genes that defines the cell type. During cell division, not only the …

Links between DNA methylation and nucleosome occupancy in the human genome

CK Collings, JN Anderson - Epigenetics & chromatin, 2017 - Springer
Background DNA methylation is an epigenetic modification that is enriched in
heterochromatin but depleted at active promoters and enhancers. However, the debate on …

DNA methylation regulated nucleosome dynamics

I Jimenez-Useche, J Ke, Y Tian, D Shim, SC Howell… - Scientific reports, 2013 - nature.com
A strong correlation between nucleosome positioning and DNA methylation patterns has
been reported in literature. However, the mechanistic model accounting for the correlation …

Direct DNA methylation profiling with an electric biosensor

DK Ban, Y Liu, Z Wang, S Ramachandran, N Sarkar… - ACS …, 2020 - ACS Publications
DNA methylation is one of the principal epigenetic mechanisms that control gene expression
in humans, and its profiling provides critical information about health and disease. Current …

Simulation studies on signature interactions between cancer DNA and cysteamine-decorated AuNPs for universal cancer screening

W Phanchai, U Srikulwong, A Chuaephon… - ACS Applied Nano …, 2022 - ACS Publications
In cancer genomes, DNA methylation results in the formation of a distinct methylation
landscape (methylscape) characterized by clustered methylation at regulatory regions …

Hydroxymethylation of DNA influences nucleosomal conformation and stability in vitro

A Mendonca, EH Chang, W Liu, C Yuan - Biochimica et Biophysica Acta …, 2014 - Elsevier
Background Hydroxymethylation of DNA at the C5 position of cytosine (5hmC) is recognized
as an important epigenetic mark. The molecular role of 5hmC in gene regulation, however …

CpG and methylation-dependent DNA binding and dynamics of the methylcytosine binding domain 2 protein at the single-molecule level

H Pan, SM Bilinovich, P Kaur, R Riehn… - Nucleic acids …, 2017 - academic.oup.com
The methylcytosine-binding domain 2 (MBD2) protein recruits the nucleosome remodeling
and deacetylase complex (NuRD) to methylated DNA to modify chromatin and regulate …