Integration of metabolomics data into metabolic networks

N Töpfer, S Kleessen, Z Nikoloski - Frontiers in plant science, 2015 - frontiersin.org
Metabolite levels together with their corresponding metabolic fluxes are integrative
outcomes of biochemical transformations and regulatory processes and they can be used to …

Redox systems biology: harnessing the sentinels of the cysteine redoxome

JM Held - Antioxidants & redox signaling, 2020 - liebertpub.com
Significance: Cellular redox processes are highly interconnected, yet not in equilibrium, and
governed by a wide range of biochemical parameters. Technological advances continue …

Physics-Enhanced neural ordinary differential equations: Application to industrial chemical reaction systems

F Sorourifar, Y Peng, I Castillo, L Bui… - Industrial & …, 2023 - ACS Publications
Ordinary differential equations (ODEs) are extremely important in modeling dynamic
systems, such as chemical reaction networks. However, many challenges exist for building …

Pathogenicity of Mycobacterium tuberculosis Is Expressed by Regulating Metabolic Thresholds of the Host Macrophage

P Mehrotra, SV Jamwal, N Saquib, N Sinha… - PLoS …, 2014 - journals.plos.org
The success of Mycobacterium tuberculosis as a pathogen derives from its facile adaptation
to the intracellular milieu of human macrophages. To explore this process, we asked …

[HTML][HTML] Advances in biorenewables-resource-waste systems and modelling

M Guo, C Wu, S Chapman, X Yu, T Vinestock… - Carbon Capture Science …, 2023 - Elsevier
The transformation to a resource-circular bio-economy offers a mechanism to mitigate
climate change and environmental degradation. As advanced bioeconomy components …

[PDF][PDF] Exact wave solutions to the simplified modified Camassa-Holm equation in mathematical physics

MN Islam, M Asaduzzaman, MS Ali - Aims Math, 2019 - researchgate.net
Exact wave solutions to the simplified modified Camassa-Holm equation in mathematical
physics Page 1 AIMS Mathematics, 5 (1): 26–41. DOI: 10.3934/math.2020003 Received: 04 …

Simulation and optimization of nutrient uptake and biomass formation using a multi-parameter Monod-type model of tobacco BY-2 cell suspension cultures in a stirred …

H Nausch, M Baldan, K Teichert, J Lutz… - Frontiers in Plant …, 2023 - frontiersin.org
Introduction Tobacco (Nicotiana tabacum) cv Bright Yellow-2 (BY-2) cell suspension cultures
enable the rapid production of complex protein-based biopharmaceuticals but currently …

Increasing neural stem cell division asymmetry and quiescence are predicted to contribute to the age-related decline in neurogenesis

L Bast, F Calzolari, MK Strasser, J Hasenauer, FJ Theis… - Cell reports, 2018 - cell.com
Adult murine neural stem cells (NSCs) generate neurons in drastically declining numbers
with age. How cellular dynamics sustain neurogenesis and how alterations with age may …

Catalyst: fast biochemical modeling with Julia

TE Loman, Y Ma, V Ilin, S Gowda, N Korsbo, N Yewale… - bioRxiv, 2022 - biorxiv.org
We introduce Catalyst. jl, a flexible and feature-filled Julia library for modeling and high
performance simulation of chemical reaction networks (CRNs). Catalyst acts as both a …

Impedance spectroscopy of nanocrystalline MgFe2O4 and MnFe2O4 ferrite ceramics: effect of grain boundaries on the electrical properties

DL Sekulić, ZZ Lazarević, ČD Jovalekić… - Science of …, 2016 - doiserbia.nb.rs
Two ferrite ceramic materials, MgFe2O4 and MnFe2O4, were successfully fabricated by a
conventional sintering of nanosized powders (at 1373 K for 2 h) synthesized by soft …