On the dependency of cellular protein levels on mRNA abundance

Y Liu, A Beyer, R Aebersold - Cell, 2016 - cell.com
The question of how genomic information is expressed to determine phenotypes is of central
importance for basic and translational life science research and has been studied by …

Synthesis of ribosomes in Saccharomyces cerevisiae

JR Warner - Microbiological reviews, 1989 - Am Soc Microbiol
The assembly of a eucaryotic ribosome requires the synthesis of four ribosomal ribonucleic
acid (RNA) molecules and more than 75 ribosomal proteins. It utilizes all three RNA …

Patterns of ribosomal protein expression specify normal and malignant human cells

JC Guimaraes, M Zavolan - Genome biology, 2016 - Springer
Background Ribosomes are highly conserved molecular machines whose core composition
has traditionally been regarded as invariant. However, recent studies have reported …

Quantitative proteomic analysis reveals posttranslational responses to aneuploidy in yeast

N Dephoure, S Hwang, C O'Sullivan, SE Dodgson… - Elife, 2014 - elifesciences.org
Aneuploidy causes severe developmental defects and is a near universal feature of tumor
cells. Despite its profound effects, the cellular processes affected by aneuploidy are not well …

Complementary profiling of gene expression at the transcriptome and proteome levels in saccharomyces cerevisiae* S

TJ Griffin, SP Gygi, T Ideker, B Rist, J Eng… - Molecular & Cellular …, 2002 - ASBMB
Using an integrated genomic and proteomic approach, we have investigated the effects of
carbon source perturbation on steady-state gene expression in the yeast Saccharomyces …

[HTML][HTML] Yeast life span extension by depletion of 60s ribosomal subunits is mediated by Gcn4

KK Steffen, VL MacKay, EO Kerr, M Tsuchiya, D Hu… - Cell, 2008 - cell.com
In nearly every organism studied, reduced caloric intake extends life span. In yeast, span
extension from dietary restriction is thought to be mediated by the highly conserved, nutrient …

Universality and structure of the N-end rule

DK Gonda, A Bachmair, I Wünning, JW Tobias… - Journal of Biological …, 1989 - ASBMB
Our previous work has shown that, in the yeast Saccharomyces cerevisiae, any of the eight
stabilizing amino-terminal residues confers a long (> 20 h) half-life on a test protein β …

The ribosomal protein genes and Minute loci of Drosophila melanogaster

SJ Marygold, J Roote, G Reuter, A Lambertsson… - Genome biology, 2007 - Springer
Background Mutations in genes encoding ribosomal proteins (RPs) have been shown to
cause an array of cellular and developmental defects in a variety of organisms. In …

A dynamic model of proteome changes reveals new roles for transcript alteration in yeast

MV Lee, SE Topper, SL Hubler, J Hose… - Molecular systems …, 2011 - embopress.org
The transcriptome and proteome change dynamically as cells respond to environmental
stress; however, prior proteomic studies reported poor correlation between mRNA and …

The degradation signal in a short-lived protein

A Bachmair, A Varshavsky - cell, 1989 - cell.com
Our previous work has shown that the amino-terminal residue of a short-lived protein is a
distinct component of the protein's degradation signal. To define the complete signal …