Antimicrobial peptides: an update on classifications and databases

A Bin Hafeez, X Jiang, PJ Bergen, Y Zhu - International journal of …, 2021 - mdpi.com
Antimicrobial peptides (AMPs) are distributed across all kingdoms of life and are an
indispensable component of host defenses. They consist of predominantly short cationic …

A review on applications of computational methods in drug screening and design

X Lin, X Li, X Lin - Molecules, 2020 - mdpi.com
Drug development is one of the most significant processes in the pharmaceutical industry.
Various computational methods have dramatically reduced the time and cost of drug …

DBAASP v3: database of antimicrobial/cytotoxic activity and structure of peptides as a resource for development of new therapeutics

M Pirtskhalava, AA Amstrong, M Grigolava… - Nucleic acids …, 2021 - academic.oup.com
Abstract The Database of Antimicrobial Activity and Structure of Peptides (DBAASP) is an
open-access, comprehensive database containing information on amino acid sequences …

Concepts of artificial intelligence for computer-assisted drug discovery

X Yang, Y Wang, R Byrne, G Schneider… - Chemical …, 2019 - ACS Publications
Artificial intelligence (AI), and, in particular, deep learning as a subcategory of AI, provides
opportunities for the discovery and development of innovative drugs. Various machine …

Artificial intelligence and machine learning‐aided drug discovery in central nervous system diseases: State‐of‐the‐arts and future directions

S Vatansever, A Schlessinger, D Wacker… - Medicinal research …, 2021 - Wiley Online Library
Neurological disorders significantly outnumber diseases in other therapeutic areas.
However, developing drugs for central nervous system (CNS) disorders remains the most …

Machine learning-guided discovery and design of non-hemolytic peptides

F Plisson, O Ramírez-Sánchez… - Scientific reports, 2020 - nature.com
Reducing hurdles to clinical trials without compromising the therapeutic promises of peptide
candidates becomes an essential step in peptide-based drug design. Machine-learning …

Toxicity prediction based on artificial intelligence: A multidisciplinary overview

E Pérez Santín, R Rodríguez Solana… - Wiley …, 2021 - Wiley Online Library
The use and production of chemical compounds are subjected to strong legislative pressure.
Chemical toxicity and adverse effects derived from exposure to chemicals are key regulatory …

PPI-affinity: A web tool for the prediction and optimization of protein–peptide and protein–protein binding affinity

S Romero-Molina, YB Ruiz-Blanco… - Journal of proteome …, 2022 - ACS Publications
Virtual screening of protein–protein and protein–peptide interactions is a challenging task
that directly impacts the processes of hit identification and hit-to-lead optimization in drug …

Probing the environmental toxicity of deep eutectic solvents and their components: An in silico modeling approach

AK Halder, MNDS Cordeiro - ACS Sustainable Chemistry & …, 2019 - ACS Publications
Because of the increasing demand of greener solvents, deep eutectic solvents (DES) have
just emerged as low-cost alternative solvents for a broad range of applications. However …

High throughput virtual screening (HTVS) of peptide library: Technological advancement in ligand discovery

NM Tripathi, A Bandyopadhyay - European Journal of Medicinal Chemistry, 2022 - Elsevier
High-throughput virtual screening (HTVS) is a leading biopharmaceutical technology that
employs computational algorithms to uncover biologically active compounds from large …