Archaea and the origin of eukaryotes

L Eme, A Spang, J Lombard, CW Stairs… - Nature Reviews …, 2017 - nature.com
Woese and Fox's 1977 paper on the discovery of the Archaea triggered a revolution in the
field of evolutionary biology by showing that life was divided into not only prokaryotes and …

Functional horizontal gene transfer from bacteria to eukaryotes

F Husnik, JP McCutcheon - Nature Reviews Microbiology, 2018 - nature.com
Bacteria influence eukaryotic biology as parasitic, commensal or beneficial symbionts. Aside
from these organismal interactions, bacteria have also been important sources of new …

Horizontal gene transfer in eukaryotes: not if, but how much?

J Van Etten, D Bhattacharya - Trends in Genetics, 2020 - cell.com
Horizontal gene transfer (HGT), the movement of genetic material across branches of the
tree of life, is well established in prokaryotes and uncontroversial. This is explained in part …

Contamination detection in genomic data: more is not enough

L Cornet, D Baurain - Genome Biology, 2022 - Springer
The decreasing cost of sequencing and concomitant augmentation of publicly available
genomes have created an acute need for automated software to assess genomic …

Metabolites of microbiota response to tryptophan and intestinal mucosal immunity: A therapeutic target to control intestinal inflammation

J Zhang, S Zhu, N Ma, LJ Johnston… - Medicinal Research …, 2021 - Wiley Online Library
In a complex, diverse intestinal environment, commensal microbiota metabolizes excessive
dietary tryptophan to produce more bioactive metabolites connecting with kinds of diverse …

Population-level analysis of Blastocystis subtype prevalence and variation in the human gut microbiota

RY Tito, S Chaffron, C Caenepeel, G Lima-Mendez… - Gut, 2019 - gut.bmj.com
Objective Human gut microbiome studies are mainly bacteria-and archaea-oriented,
overlooking the presence of single-cell eukaryotes such as Blastocystis, an enteric …

Associations between gut microbiota and common luminal intestinal parasites

CR Stensvold, M van der Giezen - Trends in Parasitology, 2018 - cell.com
The development and integration of DNA-based methods in research and clinical
microbiology laboratories have enabled standardised and comprehensive detection and …

A tryptophan metabolite made by a gut microbiome eukaryote induces pro‐inflammatory T cells

L Wojciech, CW Png, EY Koh, DYQ Kioh, L Deng… - The EMBO …, 2023 - embopress.org
The large intestine harbors microorganisms playing unique roles in host physiology. The
beneficial or detrimental outcome of host‐microbiome coexistence depends largely on the …

Gut protozoa: friends or foes of the human gut microbiota?

M Chabé, A Lokmer, L Ségurel - Trends in Parasitology, 2017 - cell.com
The importance of the gut microbiota for human health has sparked a strong interest in the
study of the factors that shape its composition and diversity. Despite the growing evidence …

Transposable elements drive intron gain in diverse eukaryotes

L Gozashti, SW Roy, B Thornlow… - Proceedings of the …, 2022 - National Acad Sciences
There is massive variation in intron numbers across eukaryotic genomes, yet the major
drivers of intron content during evolution remain elusive. Rapid intron loss and gain in some …