Methods for biological data integration: perspectives and challenges

V Gligorijević, N Pržulj - Journal of the Royal Society …, 2015 - royalsocietypublishing.org
Rapid technological advances have led to the production of different types of biological data
and enabled construction of complex networks with various types of interactions between …

[HTML][HTML] A novel nonnegative matrix factorization-based model for attributed graph clustering by incorporating complementary information

V Jannesari, M Keshvari, K Berahmand - Expert Systems with Applications, 2024 - Elsevier
Attributed graph clustering is a prominent research area, catering to the increasing need for
understanding real-world systems by uncovering exhaustive meaningful latent knowledge …

[HTML][HTML] Dual regularized unsupervised feature selection based on matrix factorization and minimum redundancy with application in gene selection

F Saberi-Movahed, M Rostami, K Berahmand… - Knowledge-Based …, 2022 - Elsevier
Gene expression data have become increasingly important in machine learning and
computational biology over the past few years. In the field of gene expression analysis …

Graph regularized nonnegative matrix factorization for community detection in attributed networks

K Berahmand, M Mohammadi… - … on Network Science …, 2022 - ieeexplore.ieee.org
Community detection has become an important research topic in machine learning due to
the proliferation of network data. However, most existing methods have been developed …

The why and how of nonnegative matrix factorization

N Gillis - … , optimization, kernels, and support vector machines, 2014 - books.google.com
Nonnegative matrix factorization (NMF) has become a widely used tool for the analysis of
high-dimensional data as it automatically extracts sparse and meaningful features from a set …

WSNMF: Weighted symmetric nonnegative matrix factorization for attributed graph clustering

K Berahmand, M Mohammadi, R Sheikhpour, Y Li… - Neurocomputing, 2024 - Elsevier
Abstract In recent times, Symmetric Nonnegative Matrix Factorization (SNMF), a derivative of
Nonnegative Matrix Factorization (NMF), has surfaced as a promising technique for graph …

Robust manifold nonnegative matrix factorization

J Huang, F Nie, H Huang, C Ding - ACM Transactions on Knowledge …, 2014 - dl.acm.org
Nonnegative Matrix Factorization (NMF) has been one of the most widely used clustering
techniques for exploratory data analysis. However, since each data point enters the …

[HTML][HTML] Unsupervised feature selection based on variance–covariance subspace distance

S Karami, F Saberi-Movahed, P Tiwari, P Marttinen… - Neural Networks, 2023 - Elsevier
Subspace distance is an invaluable tool exploited in a wide range of feature selection
methods. The power of subspace distance is that it can identify a representative subspace …

[图书][B] Nonnegative matrix factorization

N Gillis - 2020 - SIAM
Identifying the underlying structure of a data set and extracting meaningful information is a
key problem in data analysis. Simple and powerful methods to achieve this goal are linear …

Data fusion by matrix factorization

M Žitnik, B Zupan - IEEE transactions on pattern analysis and …, 2014 - ieeexplore.ieee.org
For most problems in science and engineering we can obtain data sets that describe the
observed system from various perspectives and record the behavior of its individual …