Comparative genomics

W Miller, KD Makova, A Nekrutenko… - Annu. Rev. Genomics …, 2004 - annualreviews.org
▪ Abstract The genomes from three mammals (human, mouse, and rat), two worms, and
several yeasts have been sequenced, and more genomes will be completed in the near …

[图书][B] The regulatory genome: gene regulatory networks in development and evolution

EH Davidson - 2010 - books.google.com
Gene regulatory networks are the most complex, extensive control systems found in nature.
The interaction between biology and evolution has been the subject of great interest in …

Identification and characterization of multi-species conserved sequences

EH Margulies, M Blanchette, D Haussler… - Genome …, 2003 - genome.cshlp.org
Comparative sequence analysis has become an essential component of studies aiming to
elucidate genome function. The increasing availability of genomic sequences from multiple …

Bioinformatics for the'bench biologist': how to find regulatory regions in genomic DNA

J Nardone, DU Lee, KM Ansel, A Rao - Nature Immunology, 2004 - nature.com
The combination of bioinformatic and biological approaches constitutes a powerful method
for identifying gene regulatory elements. High-quality genome sequences are available in …

The paralogous hematopoietic regulators Lyl1 and Scl are coregulated by Ets and GATA factors, but Lyl1 cannot rescue the early Scl–/– phenotype

WYI Chan, GA Follows, G Lacaud, JE Pimanda… - Blood, 2007 - ashpublications.org
Transcription factors are key regulators of hematopoietic stem cells (HSCs), yet the
molecular mechanisms that control their expression are largely unknown. Previously, we …

Identifying and mapping cell-type-specific chromatin programming of gene expression

TT Marstrand, JD Storey - Proceedings of the National …, 2014 - National Acad Sciences
A problem of substantial interest is to systematically map variation in chromatin structure to
gene-expression regulation across conditions, environments, or differentiated cell types. We …

[PDF][PDF] Gene regulatory networks governing haematopoietic stem cell development and identity

JE Pimanda, B Göttgens - International Journal of Developmental …, 2010 - researchgate.net
Development can be viewed as a dynamic progression through regulatory states which
characterise the various cell types within a given differentiation cascade. To understand the …

Comparative sequencing provides insights about the structure and conservation of marsupial and monotreme genomes

EH Margulies… - Proceedings of the …, 2005 - National Acad Sciences
Sequencing and comparative analyses of genomes from multiple vertebrates are providing
insights about the genetic basis for biological diversity. To date, these efforts largely have …

Friend of GATA-1–independent transcriptional repression: a novel mode of GATA-1 function

KD Johnson, ME Boyer, JA Kang… - Blood, The Journal …, 2007 - ashpublications.org
The GATA-1–interacting protein Friend Of GATA-1 (FOG-1) is essential for the proper
transcriptional activation and repression of numerous GATA-1 target genes. Although FOG-1 …

[HTML][HTML] A compendium of genome-wide hematopoietic transcription factor maps supports the identification of gene regulatory control mechanisms

R Hannah, A Joshi, NK Wilson, S Kinston… - Experimental …, 2011 - Elsevier
OBJECTIVE: Key regulators of blood stem cell differentiation into the various mature
hematopoietic lineages are commonly encoded by transcription factor genes. Elucidation of …