Double-edged sword: the evolutionary consequences of the epigenetic silencing of transposable elements

JY Choi, YCG Lee - PLoS genetics, 2020 - journals.plos.org
Transposable elements (TEs) are genomic parasites that selfishly replicate at the expense of
host fitness. Fifty years of evolutionary studies of TEs have concentrated on the deleterious …

Epigenetics and its implications for plant biology. 1. The epigenetic network in plants

RT Grant-Downton, HG Dickinson - Annals of botany, 2005 - academic.oup.com
Background Epigenetics has rapidly evolved in the past decade to form an exciting new
branch of biology. In modern terms,'epigenetics' studies molecular pathways regulating how …

Distinct Populations of Primary and Secondary Effectors During RNAi in C. elegans

J Pak, A Fire - Science, 2007 - science.org
RNA interference (RNAi) is a phylogenetically widespread gene-silencing process triggered
by double-stranded RNA. In plants and Caenorhabditis elegans, two distinct populations of …

Reconstructing de novo silencing of an active plant retrotransposon

A Marí-Ordóñez, A Marchais, M Etcheverry, A Martin… - Nature …, 2013 - nature.com
Transposable elements (TEs) contribute to genome size, organization and evolution. In
plants, their activity is primarily controlled by transcriptional gene silencing (TGS), usually …

RNA silencing of single and multiple members in a gene family of rice

D Miki, R Itoh, K Shimamoto - Plant physiology, 2005 - academic.oup.com
RNA silencing with inverted repeat (IR) constructs has been used to suppress gene
expression in various organisms. However, the transitive RNA-silencing effect described in …

Versatile gene-specific sequence tags for Arabidopsis functional genomics: transcript profiling and reverse genetics applications

P Hilson, J Allemeersch, T Altmann, S Aubourg… - Genome …, 2004 - genome.cshlp.org
Microarray transcript profiling and RNA interference are two new technologies crucial for
large-scale gene function studies in multicellular eukaryotes. Both rely on sequence-specific …

A stepwise pathway for biogenesis of 24‐nt secondary siRNAs and spreading of DNA methylation

L Daxinger, T Kanno, E Bucher… - The EMBO …, 2009 - embopress.org
We used a transgene system to study spreading of RNA‐directed DNA methylation (RdDM)
during transcriptional gene silencing in Arabidopsis thaliana. Forward and reverse genetics …

RNA silencing movement in plants

K Kalantidis, HT Schumacher, T Alexiadis… - Biology of the …, 2008 - Wiley Online Library
Higher eukaryotes have developed a mechanism of sequence‐specific RNA degradation
which is known as RNA silencing. In plants and some animals, similar to the nematode …

[HTML][HTML] Prolonged transcriptional silencing and CpG methylation induced by siRNAs targeted to the HIV-1 promoter region

K Suzuki, T Shijuuku, T Fukamachi… - Journal of RNAi and …, 2005 - ncbi.nlm.nih.gov
In addition to the degradation of homologous RNAs through the RNA interference (RNAi)
pathway, small interfering RNAs (siRNAs) can in some systems induce cytosine methylation …

High‐lysine corn generated by endosperm‐specific suppression of lysine catabolism using RNAi

NM Houmard, JL Mainville, CP Bonin… - Plant biotechnology …, 2007 - Wiley Online Library
Because of the limited lysine content in corn grain, synthetic lysine supplements are added
to corn meal‐based rations for animal feed. The development of biotechnology, combined …