Emergence of SARS-CoV-2 through recombination and strong purifying selection

X Li, EE Giorgi, MH Marichannegowda, B Foley… - Science …, 2020 - science.org
COVID-19 has become a global pandemic caused by the novel coronavirus SARS-CoV-2.
Understanding the origins of SARS-CoV-2 is critical for deterring future zoonosis …

Spin-enhanced nanodiamond biosensing for ultrasensitive diagnostics

BS Miller, L Bezinge, HD Gliddon, D Huang, G Dold… - Nature, 2020 - nature.com
The quantum spin properties of nitrogen-vacancy defects in diamond enable diverse
applications in quantum computing and communications. However, fluorescent …

Learning the language of viral evolution and escape

B Hie, ED Zhong, B Berger, B Bryson - Science, 2021 - science.org
The ability for viruses to mutate and evade the human immune system and cause infection,
called viral escape, remains an obstacle to antiviral and vaccine development …

The COVID misinfodemic: not new, never more lethal

C Apetrei, PA Marx, JW Mellors, I Pandrea - Trends in Microbiology, 2022 - cell.com
'Infodemia'is a portmanteau between 'information'and 'epidemics', referring to wide and rapid
accumulation and dissemination of information, misinformation, and disinformation about a …

Virus Variation Resource–improved response to emergent viral outbreaks

EL Hatcher, SA Zhdanov, Y Bao, O Blinkova… - Nucleic acids …, 2017 - academic.oup.com
Abstract The Virus Variation Resource is a value-added viral sequence data resource
hosted by the National Center for Biotechnology Information. The resource is located at …

Human neutralizing antibodies to cold linear epitopes and subdomain 1 of the SARS-CoV-2 spike glycoprotein

F Bianchini, V Crivelli, ME Abernathy, C Guerra… - Science …, 2023 - science.org
Emergence of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) variants
diminishes the efficacy of vaccines and antiviral monoclonal antibodies. Continued …

Population genomics of intrapatient HIV-1 evolution

F Zanini, J Brodin, L Thebo, C Lanz, G Bratt, J Albert… - Elife, 2015 - elifesciences.org
Many microbial populations rapidly adapt to changing environments with multiple variants
competing for survival. To quantify such complex evolutionary dynamics in vivo, time …

Face-time with TAR: Portraits of an HIV-1 RNA with diverse modes of effector recognition relevant for drug discovery

SS Chavali, R Bonn-Breach, JE Wedekind - Journal of Biological Chemistry, 2019 - ASBMB
Small molecules and short peptides that potently and selectively bind RNA are rare, making
the molecular structures of these complexes highly exceptional. Accordingly, several recent …

Antibody lineages with vaccine-induced antigen-binding hotspots develop broad HIV neutralization

R Kong, H Duan, Z Sheng, K Xu, P Acharya, X Chen… - Cell, 2019 - cell.com
The vaccine-mediated elicitation of antibodies (Abs) capable of neutralizing diverse HIV-1
strains has been a long-standing goal. To understand how broadly neutralizing antibodies …

CRISPR/Cas9 system targeting regulatory genes of HIV-1 inhibits viral replication in infected T-cell cultures

Y Ophinni, M Inoue, T Kotaki, M Kameoka - Scientific reports, 2018 - nature.com
The CRISPR/Cas9 system provides a novel and promising tool for editing the HIV-1 proviral
genome. We designed RNA-guided CRISPR/Cas9 targeting the HIV-1 regulatory genes tat …