Reconsidering plant memory: Intersections between stress recovery, RNA turnover, and epigenetics

PA Crisp, D Ganguly, SR Eichten, JO Borevitz… - Science …, 2016 - science.org
Plants grow in dynamic environments where they can be exposed to a multitude of stressful
factors, all of which affect their development, yield, and, ultimately, reproductive success …

Controlling gene expression in response to stress

E De Nadal, G Ammerer, F Posas - Nature Reviews Genetics, 2011 - nature.com
Acute stress puts cells at risk, and rapid adaptation is crucial for maximizing cell survival.
Cellular adaptation mechanisms include modification of certain aspects of cell physiology …

Response to hyperosmotic stress

H Saito, F Posas - Genetics, 2012 - academic.oup.com
An appropriate response and adaptation to hyperosmolarity, ie., an external osmolarity that
is higher than the physiological range, can be a matter of life or death for all cells. It is …

Dynamic transcriptome analysis measures rates of mRNA synthesis and decay in yeast

C Miller, B Schwalb, K Maier, D Schulz… - Molecular systems …, 2011 - embopress.org
To obtain rates of mRNA synthesis and decay in yeast, we established dynamic
transcriptome analysis (DTA). DTA combines non‐perturbing metabolic RNA labeling with …

The HOG pathway and the regulation of osmoadaptive responses in yeast

E de Nadal, F Posas - FEMS yeast research, 2022 - academic.oup.com
Cells coordinate intracellular activities in response to changes in the extracellular
environment to maximize their probability of survival and proliferation. Eukaryotic cells need …

A dynamic model of proteome changes reveals new roles for transcript alteration in yeast

MV Lee, SE Topper, SL Hubler, J Hose… - Molecular systems …, 2011 - embopress.org
The transcriptome and proteome change dynamically as cells respond to environmental
stress; however, prior proteomic studies reported poor correlation between mRNA and …

XRN4 and LARP1 are required for a heat-triggered mRNA decay pathway involved in plant acclimation and survival during thermal stress

R Merret, J Descombin, Y Juan, JJ Favory… - Cell reports, 2013 - cell.com
To survive adverse and ever-changing environmental conditions, an organism must be able
to adapt. It has long been established that the cellular reaction to stress includes the …

Eukaryotic mRNA decay: methodologies, pathways, and links to other stages of gene expression

JE Pérez-Ortín, P Alepuz, S Chávez… - Journal of molecular …, 2013 - Elsevier
Abstract mRNA concentration depends on the balance between transcription and
degradation rates. On both sides of the equilibrium, synthesis and degradation show …

[HTML][HTML] Promoter elements regulate cytoplasmic mRNA decay

A Bregman, M Avraham-Kelbert, O Barkai, L Duek… - Cell, 2011 - cell.com
Promoters are DNA elements that enable transcription and its regulation by trans-acting
factors. Here, we demonstrate that yeast promoters can also regulate mRNA decay after the …

Rapid recovery gene downregulation during excess-light stress and recovery in Arabidopsis

PA Crisp, DR Ganguly, AB Smith, KD Murray… - The Plant …, 2017 - academic.oup.com
Stress recovery may prove to be a promising approach to increase plant performance and,
theoretically, mRNA instability may facilitate faster recovery. Transcriptome (RNA-seq …