Regulation and function of DNA methylation in plants and animals

XJ He, T Chen, JK Zhu - Cell research, 2011 - nature.com
DNA methylation is an important epigenetic mark involved in diverse biological processes.
In plants, DNA methylation can be established through the RNA-directed DNA methylation …

Multisubunit RNA polymerases IV and V: purveyors of non-coding RNA for plant gene silencing

JR Haag, CS Pikaard - Nature reviews Molecular cell biology, 2011 - nature.com
In all eukaryotes, nuclear DNA-dependent RNA polymerases I, II and III synthesize the
myriad RNAs that are essential for life. Remarkably, plants have evolved two additional …

CHH islands: de novo DNA methylation in near-gene chromatin regulation in maize

JI Gent, NA Ellis, L Guo, AE Harkess, Y Yao… - Genome …, 2013 - genome.cshlp.org
Small RNA-mediated regulation of chromatin structure is an important means of suppressing
unwanted genetic activity in diverse plants, fungi, and animals. In plants specifically, 24-nt …

Transgenerational epigenetic inheritance: more questions than answers

L Daxinger, E Whitelaw - Genome research, 2010 - genome.cshlp.org
Epigenetic modifications are widely accepted as playing a critical role in the regulation of
gene expression and thereby contributing to the determination of the phenotype of …

Paramutation and related phenomena in diverse species

JB Hollick - Nature Reviews Genetics, 2017 - nature.com
Paramutation describes a process that results in heritable epigenetic changes of gene
regulation and trans-homologue interactions. Recent discoveries in model organisms have …

Small RNA-mediated epigenetic modifications in plants

SA Simon, BC Meyers - Current opinion in plant biology, 2011 - Elsevier
Epigenetic modifications in plants can be directed and mediated by small RNAs (sRNAs).
This regulation is composed of a highly interactive network of sRNA-directed DNA …

DNA-dependent RNA polymerases in plants

DL Yang, K Huang, D Deng, Y Zeng, Z Wang… - The Plant …, 2023 - academic.oup.com
DNA-dependent RNA polymerases (Pols) transfer the genetic information stored in genomic
DNA to RNA in all organisms. In eukaryotes, the typical products of nuclear Pol I, Pol II, and …

RNA Pol IV and V in gene silencing: Rebel polymerases evolving away from Pol II's rules

M Zhou, JA Law - Current opinion in plant biology, 2015 - Elsevier
Highlights•Plants encode extra RNA polymerases (Pol IV and V) that facilitate DNA
methylation.•Pol IV and V subunits evolved from Pol II subunits, and are continuing to …

Paramutation in maize: RNA mediated trans-generational gene silencing

MA Arteaga-Vazquez, VL Chandler - Current opinion in genetics & …, 2010 - Elsevier
Paramutation involves trans-interactions between alleles or homologous sequences that
establish distinct gene expression states that are heritable for generations. It was first …

Ancient origin and recent innovations of RNA polymerase IV and V

Y Huang, T Kendall, ES Forsythe… - Molecular biology …, 2015 - academic.oup.com
Small RNA-mediated chromatin modification is a conserved feature of eukaryotes. In
flowering plants, the short interfering (si) RNAs that direct transcriptional silencing are …