Regulation of gene activation by competitive cross talking pathways

F Jiao, C Zhu - Biophysical journal, 2020 - cell.com
The phenomenon of a gene expression burst has been attributed to random transitions
between the active and inactive states of a gene. However, the mechanisms underlying …

A generalized moment-based method for estimating parameters of stochastic gene transcription

L Chen, C Zhu, F Jiao - Mathematical Biosciences, 2022 - Elsevier
Gene transcription is a stochastic process manifested by the mRNA distribution data at the
single-cell level, which can be fitted using the mass function P m that quantifies the …

A novel approach for calculating exact forms of mRNA distribution in single-cell measurements

J Chen, F Jiao - Mathematics, 2021 - mdpi.com
Gene transcription is a stochastic process manifested by fluctuations in mRNA copy
numbers in individual isogenic cells. Together with mathematical models of stochastic …

Distribution modes and their corresponding parameter regions in stochastic gene transcription

F Jiao, Q Sun, M Tang, J Yu, B Zheng - SIAM Journal on Applied Mathematics, 2015 - SIAM
Gene transcription is a stochastic process, manifested by heterogeneous distribution of
Messenger RNA (mRNA) copy numbers in a population of isogenic cells. The most …

[HTML][HTML] Analytical formula and dynamic profile of mRNA distribution

F Jiao, J Ren, J Yu - Discrete and Continuous Dynamical Systems …, 2019 - aimsciences.org
The stochasticity of transcription can be quantified by mRNA distribution $ P_m (t) $, the
probability that there are $ m $ mRNA molecules for the gene at time $ t $ in one cell …

Dynamical Regulation of mRNA Distribution by Cross‐Talking Signaling Pathways

C Zhu, G Han, F Jiao - Complexity, 2020 - Wiley Online Library
Gene transcription is a random process in single cells manifested by the observed
distribution of mRNA copy numbers in homogeneous cell populations. A central question is …

The nonlinear dynamics and fluctuations of mRNA levels in cell cycle coupled transcription

Q Sun, F Jiao, G Lin, J Yu, M Tang - PLoS Computational Biology, 2019 - journals.plos.org
Gene transcription is a noisy process, and cell division cycle is an important source of gene
transcription noise. In this work, we develop a mathematical approach by coupling …

Exact results for queuing models of stochastic transcription with memory and crosstalk

Z Zhang, Q Deng, Z Wang, Y Chen, T Zhou - Physical Review E, 2021 - APS
Gene transcription is a complex multistep biochemical process, which can create memory
between individual reaction events. On the other hand, many inducible genes, when …

Inferring Transcriptional Bursting Kinetics Using Gene Expression Model with Memory and Crosstalk from scRNA-seq Data

M Wang, W Cao, Y Guo, G Wang… - Journal of …, 2024 - ui.adsabs.harvard.edu
Genetically identical cell populations growing in the same environment show a large degree
of heterogeneity in gene expression profiles, resulting in significant phenotypic …

Fluctuations of mRNA distributions in multiple pathway activated transcription.

G Lin, J Yu, Z Zhou, Q Sun… - Discrete & Continuous …, 2019 - search.ebscohost.com
Randomness in gene transcription can result in fluctuations (noise) of messenger RNA
(mRNA) levels, leading to phenotypic plasticity in the isogenic populations of cells. Recent …