Emerging themes in CryoEM─ Single particle analysis image processing

JL Vilas, JM Carazo, COS Sorzano - Chemical Reviews, 2022 - ACS Publications
Cryo-electron microscopy (CryoEM) has become a vital technique in structural biology. It is
an interdisciplinary field that takes advantage of advances in biochemistry, physics, and …

DeepEMhancer: a deep learning solution for cryo-EM volume post-processing

R Sanchez-Garcia, J Gomez-Blanco, A Cuervo… - Communications …, 2021 - nature.com
Cryo-EM maps are valuable sources of information for protein structure modeling. However,
due to the loss of contrast at high frequencies, they generally need to be post-processed to …

Applications of deep learning in electron microscopy

KP Treder, C Huang, JS Kim, AI Kirkland - Microscopy, 2022 - academic.oup.com
We review the growing use of machine learning in electron microscopy (EM) driven in part
by the availability of fast detectors operating at kiloHertz frame rates leading to large data …

A cryo-electron microscopy support film formed by 2D crystals of hydrophobin HFBI

H Fan, B Wang, Y Zhang, Y Zhu, B Song, H Xu… - Nature …, 2021 - nature.com
Cryo-electron microscopy (cryo-EM) has become a powerful tool to resolve high-resolution
structures of biomacromolecules in solution. However, air-water interface induced preferred …

A deep learning based automatic defect analysis framework for In-situ TEM ion irradiations

M Shen, G Li, D Wu, Y Yaguchi, JC Haley… - Computational Materials …, 2021 - Elsevier
Abstract Videos captured using Transmission Electron Microscopy (TEM) can encode details
regarding the morphological and temporal evolution of a material by taking snapshots of the …

Artificial intelligence in cryo-electron microscopy

JM Chung, CL Durie, J Lee - Life, 2022 - mdpi.com
Cryo-electron microscopy (cryo-EM) has become an unrivaled tool for determining the
structure of macromolecular complexes. The biological function of macromolecular …

[HTML][HTML] It's noisy out there! A review of denoising techniques in cryo-electron tomography

AS Frangakis - Journal of Structural Biology, 2021 - Elsevier
Cryo-electron tomography is the only technique that can provide sub-nanometer resolved
images of cell regions or even whole cells, without the need of labeling or staining methods …

[HTML][HTML] Single particle cryo-EM map and model validation: It's not crystal clear

GC Lander - Current Opinion in Structural Biology, 2024 - Elsevier
Highlights•Single particle cryo-EM structure validation is an area of much-needed
development, and has seen significant recent advances.•The reported resolution of a single …

Atypical structural snapshots of human cytomegalovirus GPCR interactions with host G proteins

N Tsutsumi, S Maeda, Q Qu, M Vögele, KM Jude… - Science …, 2022 - science.org
Human cytomegalovirus (HCMV) encodes G protein–coupled receptors (GPCRs) US28 and
US27, which facilitate viral pathogenesis through engagement of host G proteins. Here we …

Integrating model simulation tools and cryo‐electron microscopy

JG Beton, T Cragnolini, M Kaleel… - Wiley …, 2023 - Wiley Online Library
The power of computer simulations, including machine‐learning, has become an
inseparable part of scientific analysis of biological data. This has significantly impacted the …