A guide to computational methods for G-quadruplex prediction

E Puig Lombardi, A Londoño-Vallejo - Nucleic acids research, 2020 - academic.oup.com
Guanine-rich nucleic acids can fold into the non-B DNA or RNA structures called G-
quadruplexes (G4). Recent methodological developments have allowed the characterization …

The interplay between G-quadruplex and transcription

N Kim - Current medicinal chemistry, 2019 - ingentaconnect.com
G4 DNA is a non-canonical DNA structure consisting of a stacked array of Gquartets held
together by base pairing between guanine bases. The formation of G4 DNA requires a …

Developing novel G-quadruplex ligands: From interaction with nucleic acids to interfering with nucleic acid–protein interaction

ZY Sun, XN Wang, SQ Cheng, XX Su, TM Ou - Molecules, 2019 - mdpi.com
G-quadruplex is a special secondary structure of nucleic acids in guanine-rich sequences of
genome. G-quadruplexes have been proved to be involved in the regulation of replication …

How to untie G-quadruplex knots and why?

P Lejault, J Mitteaux, FR Sperti, D Monchaud - Cell chemical biology, 2021 - cell.com
For over two decades, the prime objective of the chemical biology community studying G-
quadruplexes (G4s) has been to use chemicals to interact with and stabilize G4s in cells to …

Small-molecule G-quadruplex stabilizers reveal a novel pathway of autophagy regulation in neurons

JF Moruno-Manchon, P Lejault, Y Wang, B McCauley… - Elife, 2020 - elifesciences.org
Guanine-rich DNA sequences can fold into four-stranded G-quadruplex (G4-DNA)
structures. G4-DNA regulates replication and transcription, at least in cancer cells. Here, we …

Yeast transcription factor Msn2 binds to G4 DNA

DL Duy, N Kim - Nucleic Acids Research, 2023 - academic.oup.com
Sequences capable of forming quadruplex or G4 DNA are prevalent in the promoter regions.
The transformation from canonical to non-canonical secondary structure apparently …

G-quadruplexes and associated proteins in aging and Alzheimer's disease

MJ Vijay Kumar, R Morales, AS Tsvetkov - Frontiers in Aging, 2023 - frontiersin.org
Aging is a prominent risk factor for many neurodegenerative disorders, such as Alzheimer's
disease (AD). Alzheimer's disease is characterized by progressive cognitive decline …

Pirh2-dependent DNA damage in neurons induced by the G-quadruplex ligand pyridostatin

RD Escarcega, AA Patil, JF Moruno-Manchon… - Journal of Biological …, 2023 - ASBMB
Noncanonical base pairing between four guanines (G) within single-stranded G-rich
sequences leads to formation of а G-quartet. Self-stacking of G-quartets results in a …

The amino acid composition of quadruplex binding proteins reveals a shared motif and predicts new potential quadruplex interactors

V Brázda, J Červeň, M Bartas, N Mikysková, J Coufal… - Molecules, 2018 - mdpi.com
The importance of local DNA structures in the regulation of basic cellular processes is an
emerging field of research. Amongst local non-B DNA structures, G-quadruplexes are …

Regulatory role of Non-canonical DNA Polymorphisms in human genome and their relevance in Cancer

N Pandya, SR Bhagwat, A Kumar - … et Biophysica Acta (BBA)-Reviews on …, 2021 - Elsevier
DNA has the ability to form polymorphic structures like canonical duplex DNA and non-
canonical triplex DNA, Cruciform, Z-DNA, G-quadruplex (G4), i-motifs, and hairpin structures …