[HTML][HTML] Application of GWAS and mGWAS in Livestock and Poultry Breeding

J Ren, Z Gao, Y Lu, M Li, J Hong, J Wu… - Animals: an Open …, 2024 - pmc.ncbi.nlm.nih.gov
Simple Summary This article first introduces the basic principles and analysis process of
genome-wide association studies and metabolome genome-wide association studies, then …

Dynamic alternations of three-dimensional chromatin architecture contribute to phenotypic characteristics of breast muscle in chicken

Z Wang, W Tian, Y Guo, D Wang, Y Zhang… - Communications …, 2024 - nature.com
Breast muscle growth rate and intramuscular fat (IMF) content show apparent differences
between fast-growing broilers and slow-growing indigenous chickens. However, the …

The accessible chromatin landscape of lipopolysaccharide-induced systemic inflammatory response identifying epigenome signatures and transcription regulatory …

Z Lv, H Fan, M Gao, X Zhang, G Li, Y Fan, Z Ning… - International Journal of …, 2024 - Elsevier
Lipopolysaccharide (LPS) can induce systemic inflammatory response (SIR) in animals.
Understanding the regulatory mechanism of SIR and therapies to ensure healthy growth is …

Comprehensive multi‐tissue epigenome atlas in sheep: A resource for complex traits, domestication, and breeding

D Zhang, J Cheng, X Li, K Huang, L Yuan, Y Zhao… - iMeta, 2024 - Wiley Online Library
Comprehensive functional genome annotation is crucial to elucidate the molecular
mechanisms of agronomic traits in livestock, yet systematic functional annotation of the …

[HTML][HTML] Research Note: Identification of core promoter region of the polyunsaturated fatty acid synthesis-related gene family in chicken

Y Liu, D Sun, X Li, M Ge, Z Hou - Poultry Science, 2023 - Elsevier
Chicken is considered an ideal model species to study the synthesis of polyunsaturated fatty
acids (PUFAs) due to its appropriate proportions of fatty acids and abundant content of …

Complex genetic architecture of the chicken Growth1 QTL region

JH Ou, T Rönneburg, Ö Carlborg, CF Honaker… - Plos one, 2024 - journals.plos.org
The genetic complexity of polygenic traits represents a captivating and intricate facet of
biological inheritance. Unlike Mendelian traits controlled by a single gene, polygenic traits …

[HTML][HTML] Identification of Quantitative Trait Loci and Candidate Genes Associated with Growth Curve Parameters in Chinese Wenshang Barred Chickens

Y Zhou, J Liu, Q Lei, H Han, W Liu, D Li, Y Sun, D Hao… - Poultry Science, 2025 - Elsevier
The growth curve is a vital instrument for assessing and forecasting weight and
developmental shifts in livestock and poultry, which reflects the changes of bodyweight traits …

[HTML][HTML] DeepOCR: A multi-species deep-learning framework for accurate identification of open chromatin regions in livestock

L Zhao, R Hao, Z Chai, W Fu, W Yang, C Li… - … Biology and Chemistry, 2024 - Elsevier
A wealth of experimental evidence has suggested that open chromatin regions (OCRs) are
involved in many critical biological activities, such as DNA replication, enhancer activity, and …

Genetic architecture of body weight, carcass, and internal organs traits of Ghanaian local chickens

RA Kanlisi, EN Amuzu-Aweh, A Naazie… - Frontiers in …, 2024 - frontiersin.org
Information on the genetic architecture of the production traits of indigenous African chicken
is limited. We performed a genome-wide association study using imputed Affymetrix Axiom® …

The ChickenGTEx pilot analysis: a reference of regulatory variants across 28 chicken tissues

D Guan, Z Bai, X Zhu, C Zhong, Y Hou… - bioRxiv, 2023 - biorxiv.org
Chicken is a valuable model for understanding fundamental biology, vertebrate evolution
and diseases, as well as a major source of nutrient-dense and lean-protein-enriched food …