Network analysis of GWAS data

MDM Leiserson, JV Eldridge, S Ramachandran… - Current opinion in …, 2013 - Elsevier
Genome-wide association studies (GWAS) identify genetic variants that distinguish a control
population from a population with a specific trait. Two challenges in GWAS are:(1) …

A deep auto-encoder model for gene expression prediction

R Xie, J Wen, A Quitadamo, J Cheng, X Shi - BMC genomics, 2017 - Springer
Background Gene expression is a key intermediate level that genotypes lead to a particular
trait. Gene expression is affected by various factors including genotypes of genetic variants …

Methods for population-based eQTL analysis in human genetics

L Tian, A Quitadamo, F Lin, X Shi - Tsinghua Science and …, 2014 - ieeexplore.ieee.org
Gene expression is a critical process in biological system that is influenced and modulated
by many factors including genetic variation. Expression Quantitative Trait Loci (eQTL) …

Identification and expression analysis of candidate genes involved in carotenoid biosynthesis in chickpea seeds

MK Rezaei, A Deokar, B Tar'An - Frontiers in Plant Science, 2016 - frontiersin.org
Plant carotenoids have a key role in preventing various diseases in human because of their
antioxidant and provitamin A properties. Chickpea is a good source of carotenoid among …

Ancient out-of-Africa mitochondrial DNA variants associate with distinct mitochondrial gene expression patterns

T Cohen, L Levin, D Mishmar - PLoS Genetics, 2016 - journals.plos.org
Mitochondrial DNA (mtDNA) variants have been traditionally used as markers to trace
ancient population migrations. Although experiments relying on model organisms and …

Tissue-specific eQTL in zebrafish

KP Dobrinski - eQTL Analysis: Methods and Protocols, 2020 - Springer
Copy number variants (CNVs) refer to the loss or gain of copies of a genomic DNA region.
While some CNVs may play a role in species evolution by enriching the diversity of an …

Co-regulated transcripts associated to cooperating eSNPs define bi-fan motifs in human gene networks

A Kreimer, I Pe'er - PLoS genetics, 2014 - journals.plos.org
Associations between the level of single transcripts and single corresponding genetic
variants, expression single nucleotide polymorphisms (eSNPs), have been extensively …

Mapping human regulatory variation using haplotype-resolved data

A Clement - 2021 - era.ed.ac.uk
Mapping regulatory variants is a powerful approach for identifying the underlying biological
mechanisms that define heritable phenotypes. Although each individual carries two copies …

Studija asocijacije varijanti i nivoa transkripcije gena leptinskog signalnog puta (LEP, LEPR i PGC1A), antioksidativne zaštite (SOD2) i inflamacije (TNF-α) sa rizikom …

IZ Kolić - 2021 - search.proquest.com
Hormon i adipocitokin leptin (LEP) moţe učestvovati u patogenezi multiple skleroze (MS)
delovanjem na produkciju potentnog proinflamatornog citokina, TNF-α, aktivnost …

[PDF][PDF] Optimisation of phasing: towards improved haplotype-based genetic investigations

Z Al Bkhetan - 2020 - minerva-access.unimelb.edu.au
■ This thesis includes the following publications that I was the primary author of.–The
content of chapter 3 appears in this publication: Ziad Al Bkhetan, Justin Zobel, Adam …