Molecular phylogenetics: principles and practice

Z Yang, B Rannala - Nature reviews genetics, 2012 - nature.com
Phylogenies are important for addressing various biological questions such as relationships
among species or genes, the origin and spread of viral infection and the demographic …

RNAi in plants: an argonaute-centered view

X Fang, Y Qi - The Plant Cell, 2016 - academic.oup.com
Argonaute (AGO) family proteins are effectors of RNAi in eukaryotes. AGOs bind small RNAs
and use them as guides to silence target genes or transposable elements at the …

Sourcing thermotolerant poly (ethylene terephthalate) hydrolase scaffolds from natural diversity

E Erickson, JE Gado, L Avilán, F Bratti… - Nature …, 2022 - nature.com
Enzymatic deconstruction of poly (ethylene terephthalate)(PET) is under intense
investigation, given the ability of hydrolase enzymes to depolymerize PET to its constituent …

An evolutionary arms race between KRAB zinc-finger genes ZNF91/93 and SVA/L1 retrotransposons

FMJ Jacobs, D Greenberg, N Nguyen, M Haeussler… - Nature, 2014 - nature.com
Throughout evolution primate genomes have been modified by waves of retrotransposon
insertions,,. For each wave, the host eventually finds a way to repress retrotransposon …

[图书][B] Modern phylogenetic comparative methods and their application in evolutionary biology: concepts and practice

LZ Garamszegi - 2014 - Springer
Many evolutionary biologists are concerned with the tremendous amount of diversity of
species, and their phenotypes, that we can currently observe in nature, and one of the most …

MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment

S Kumar, K Tamura, M Nei - Briefings in bioinformatics, 2004 - academic.oup.com
With its theoretical basis firmly established in molecular evolutionary and population
genetics, the comparative DNA and protein sequence analysis plays a central role in …

[PDF][PDF] macclade

WP Maddison, DR Maddison - Sinauer, Sunderland, MA, 1992 - sbs.utexas.edu
This book is both a manual for the computer program MacClade, describing its features and
potential uses, as well as a portrayal of a phylogenetic approach to studying diversity and …

Mammalian Atg18 (WIPI2) localizes to omegasome-anchored phagophores and positively regulates LC3 lipidation

HEJ Polson, J de Lartigue, DJ Rigden, M Reedijk… - Autophagy, 2010 - Taylor & Francis
Autophagosome formation is a complex process that begins with the nucleation of a pre-
autophagosomal structure (PAS) that expands into a phagophore or isolation membrane …

[图书][B] Computational molecular evolution

Z Yang - 2006 - books.google.com
The field of molecular evolution has experienced explosive growth in recent years due to the
rapid accumulation of genetic sequence data, continuous improvements to computer …

A giant NLR gene confers broad-spectrum resistance to Phytophthora sojae in soybean

W Wang, L Chen, K Fengler, J Bolar, V Llaca… - Nature …, 2021 - nature.com
Phytophthora root and stem rot caused by P. sojae is a destructive soybean soil-borne
disease found worldwide. Discovery of genes conferring broad-spectrum resistance to the …