[图书][B] RNA, the epicenter of genetic information

J Mattick, P Amaral - 2023 - library.oapen.org
The origin story and emergence of molecular biology is muddled. The early triumphs in
bacterial genetics and the complexity of animal and plant genomes complicate an intricate …

Repression and 3D-restructuring resolves regulatory conflicts in evolutionarily rearranged genomes

AR Ringel, Q Szabo, AM Chiariello, K Chudzik… - Cell, 2022 - cell.com
Regulatory landscapes drive complex developmental gene expression, but it remains
unclear how their integrity is maintained when incorporating novel genes and functions …

Segmentation and genome annotation algorithms for identifying chromatin state and other genomic patterns

MW Libbrecht, RCW Chan… - PLoS computational …, 2021 - journals.plos.org
Segmentation and genome annotation (SAGA) algorithms are widely used to understand
genome activity and gene regulation. These algorithms take as input epigenomic datasets …

Beyond the exome: the non-coding genome and enhancers in neurodevelopmental disorders and malformations of cortical development

E Perenthaler, S Yousefi, E Niggl… - Frontiers in cellular …, 2019 - frontiersin.org
The development of the human cerebral cortex is a complex and dynamic process, in which
neural stem cell proliferation, neuronal migration, and post-migratory neuronal organization …

Super-enhancers and their parts: from prediction efforts to pathognomonic status

AV Vasileva, MG Gladkova, GA Ashniev… - International Journal of …, 2024 - mdpi.com
Super-enhancers (SEs) are regions of the genome that play a crucial regulatory role in gene
expression by promoting large-scale transcriptional responses in various cell types and …

Reliable genotyping of recombinant genomes using a robust hidden Markov model

R Campos-Martin, S Schmickler, M Goel… - Plant …, 2023 - academic.oup.com
Meiotic recombination is an essential mechanism during sexual reproduction and includes
the exchange of chromosome segments between homologous chromosomes. New allelic …

[HTML][HTML] Identification and characterization of enhancer elements controlling cell type-specific and signalling dependent chromatin programming during hematopoietic …

A Maytum, B Edginton-White, C Bonifer - Stem Cell Investigation, 2023 - ncbi.nlm.nih.gov
The development of multi-cellular organisms from a single fertilized egg requires to
differentially execute the information encoded in our DNA. This complex process is …

Enhancers as potential targets for engineering salinity stress tolerance in crop plants

M Jain, R Garg - Physiologia plantarum, 2021 - Wiley Online Library
Enhancers represent noncoding regulatory regions of the genome located distantly from
their target genes. They regulate gene expression programs in a context‐specific manner …

[HTML][HTML] Fish-Ing for enhancers in the heart

C Parisi, S Vashisht, CL Winata - International Journal of Molecular …, 2021 - mdpi.com
Precise control of gene expression is crucial to ensure proper development and biological
functioning of an organism. Enhancers are non-coding DNA elements which play an …

Promoter repression and 3D-restructuring resolves divergent developmental gene expression in TADs

AR Ringel, Q Szabo, AM Chiariello, K Chudzik… - BioRxiv, 2021 - biorxiv.org
Cohesin loop extrusion facilitates precise gene expression by continuously driving
promoters to sample all enhancers located within the same topologically-associated domain …