Sensitivity analysis methods in the biomedical sciences

G Qian, A Mahdi - Mathematical biosciences, 2020 - Elsevier
Sensitivity analysis is an important part of a mathematical modeller's toolbox for model
analysis. In this review paper, we describe the most frequently used sensitivity techniques …

Reduction of chemical reaction networks with approximate conservation laws

A Desoeuvres, A Iosif, C Lüders, O Radulescu… - SIAM Journal on Applied …, 2024 - SIAM
Model reduction of fast-slow chemical reaction networks based on the quasi-steady state
approximation fails when the fast subsystem has first integrals. We call these first integrals …

A Computational Approach to Polynomial Conservation Laws

A Desoeuvres, A Iosif, C Lüders, O Radulescu… - SIAM Journal on Applied …, 2024 - SIAM
For polynomial ODE models, we introduce and discuss the concepts of exact and
approximate conservation laws, which are the first integrals of the full and truncated sets of …

Towards Robust Data-Driven Automated Recovery of Symbolic Conservation Laws from Limited Data

T Oellerich, M Emelianenko - arXiv preprint arXiv:2403.04889, 2024 - arxiv.org
Conservation laws are an inherent feature in many systems modeling real world
phenomena, in particular, those modeling biological and chemical systems. If the form of the …

Biological networks with singular Jacobians: their origins and adaptation criteria

T Oellerich, M Emelianenko, L Liotta, RP Araujo - bioRxiv, 2021 - biorxiv.org
This work is focused on Ordinary Differential Equations (ODE)-based models of biochemical
systems that possess a singular Jacobian manifesting in non-hyperbolic equilibria. We show …

Polynomial superlevel set representation of the multistationarity region of chemical reaction networks

AH Sadeghimanesh, M England - BMC bioinformatics, 2022 - Springer
In this paper we introduce a new representation for the multistationarity region of a reaction
network, using polynomial superlevel sets. The advantages of using this polynomial …

Polynomial Time Reachability Analysis in Discrete State Chemical Reaction Networks Obeying Conservation Laws

G Szlobodnyik, G Szederkényi - MATCH-COMMUNICATIONS IN …, 2023 - eprints.sztaki.hu
In this paper the reachability problem of discrete state Chemical Reaction Networks (d-
CRNs) is studied. We consider sub-classes of sub-and superconservative d-CRN network …

On the Liouville integrability of Edelstein's reaction system in R3

A Ferragut, C Valls, C Wiuf - Chaos, Solitons & Fractals, 2018 - Elsevier
On the Liouville integrability of Edelstein’s reaction system in R3 - ScienceDirect Skip to main
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Algebraic and Combinatorial Applications in Systems and Evolutionary Biology

M Curiel - 2024 - search.proquest.com
Many real-world problems can be expressed as the solution set of polynomial equations.
Under these constraints, these problems are addressed using tools from (computational) …

Tropical geometry and interval arithmetic methods for the analysis of biochemical networks: homeostasis research and model reduction in the presence of …

A Desoeuvres - 2021 - theses.hal.science
My PhD is about formal methods for analysing biochemical reaction network models. My
focus is on methods coping with parametric uncertainty, whose parameters aregiven as …