[HTML][HTML] A review of graph-based methods for image analysis in digital histopathology

H Sharma, N Zerbe, S Lohmann… - Diagnostic …, 2015 - diagnosticpathology.eu
Digital image analysis of histological datasets is a currently expanding field of research. With
different stains, magnifications and types of tissues, histological images are inherently …

Filling the gaps between the in vivo and in vitro microenvironment: engineering of spheroids for stem cell technology

C Gentile - Current stem cell research & therapy, 2016 - ingentaconnect.com
Engineering of in vitro three-dimensional cultures of stem cells and their progenies has
offered promising alternatives to recapitulate the in vivo microenvironment, or stem cell …

The regulation of focal adhesion complex formation and salivary gland epithelial cell organization by nanofibrous PLGA scaffolds

SJ Sequeira, DA Soscia, B Oztan, AP Mosier… - Biomaterials, 2012 - Elsevier
Nanofiber scaffolds have been useful for engineering tissues derived from mesenchymal
cells, but few studies have investigated their applicability for epithelial cell-derived tissues. In …

Prediction of Tuberculosis From Lung Tissue Images of Diversity Outbred Mice Using Jump Knowledge Based Cell Graph Neural Network

V Acharya, D Choi, B Yener, G Beamer - IEEE Access, 2024 - ieeexplore.ieee.org
Tuberculosis (TB), primarily affecting the lungs, is caused by the bacterium Mycobacterium
tuberculosis and poses a significant health risk. Detecting acid-fast bacilli (AFB) in stained …

Effects of hydroxyapatite on endothelial network formation in collagen/fibrin composite hydrogels in vitro and in vivo

RR Rao, J Ceccarelli, ML Vigen, M Gudur, R Singh… - Acta biomaterialia, 2014 - Elsevier
Co-culture of endothelial cells (EC) and mesenchymal stem cells (MSC) results in robust
vascular network formation in constrained 3-D collagen/fibrin (COL/FIB) composite …

Coupled analysis of in vitro and histology tissue samples to quantify structure-function relationship

E Acar, GE Plopper, B Yener - PloS one, 2012 - journals.plos.org
The structure/function relationship is fundamental to our understanding of biological systems
at all levels, and drives most, if not all, techniques for detecting, diagnosing, and treating …

Nuclei detection for 3d microscopy with a fully convolutional regression network

M Lapierre-Landry, Z Liu, S Ling, M Bayat… - IEEE …, 2021 - ieeexplore.ieee.org
Advances in three-dimensional microscopy and tissue clearing are enabling whole-organ
imaging with single-cell resolution. Fast and reliable image processing tools are needed to …

Multiscale feature analysis of salivary gland branching morphogenesis

CC Bilgin, S Ray, B Baydil, WP Daley, M Larsen… - PLoS …, 2012 - journals.plos.org
Pattern formation in developing tissues involves dynamic spatio-temporal changes in
cellular organization and subsequent evolution of functional adult structures. Branching …

3D printed elastomeric biomaterial mitigates compaction during in vitro vasculogenesis

RP Accolla, M Deller, TR Lansberry, A Simmons… - Acta biomaterialia, 2023 - Elsevier
A key parameter for the success of most cellular implants is the formation of a complete and
comprehensive intra-implant vessel network. Pre-vascularization, the generation of vessel …

Quantitative metric profiles capture three-dimensional temporospatial architecture to discriminate cellular functional states

L McKeen-Polizzotti, KM Henderson, B Oztan… - BMC medical …, 2011 - Springer
Background Computational analysis of tissue structure reveals sub-visual differences in
tissue functional states by extracting quantitative signature features that establish a …