Genomics of fagaceae

A Kremer, AG Abbott, JE Carlson, PS Manos… - Tree Genetics & …, 2012 - Springer
An overview of recent achievements and development of genomic resources in the
Fagaceae is provided, with major emphasis on the genera Castanea and Quercus. The …

Population structure and genetic diversity characterization of a sunflower association mapping population using SSR and SNP markers

CV Filippi, N Aguirre, JG Rivas, J Zubrzycki, A Puebla… - BMC Plant …, 2015 - Springer
Background Argentina has a long tradition of sunflower breeding, and its germplasm is a
valuable genetic resource worldwide. However, knowledge of the genetic constitution and …

De novo assembly of maritime pine transcriptome: implications for forest breeding and biotechnology

J Canales, R Bautista, P Label… - Plant Biotechnology …, 2014 - Wiley Online Library
Maritime pine (P inus pinaster A it.) is a widely distributed conifer species in S outhwestern E
urope and one of the most advanced models for conifer research. In the current work …

Imprints of Natural Selection Along Environmental Gradients in Phenology-Related Genes of Quercus petraea

FJ Alberto, J Derory, C Boury, JM Frigerio… - Genetics, 2013 - academic.oup.com
We explored single nucleotide polymorphism (SNP) variation in candidate genes for bud
burst from Quercus petraea populations sampled along gradients of latitude and altitude in …

Status and perspectives of genomic selection in forest tree breeding

D Grattapaglia - Genomic selection for crop improvement: New …, 2017 - Springer
Trees have long life cycles and become reproductively active only after several years. The
progress of tree breeding programs is therefore strongly dependent on the time needed to …

High-throughput SNP genotyping in Cucurbita pepo for map construction and quantitative trait loci mapping

C Esteras, P Gómez, AJ Monforte, J Blanca… - BMC genomics, 2012 - Springer
Background Cucurbita pepo is a member of the Cucurbitaceae family, the second-most
important horticultural family in terms of economic importance after Solanaceae. The" …

Development of high‐density SNP genotyping arrays for white spruce (Picea glauca) and transferability to subtropical and nordic congeners

N Pavy, F Gagnon, P Rigault, S Blais… - Molecular Ecology …, 2013 - Wiley Online Library
High‐density SNP genotyping arrays can be designed for any species given sufficient
sequence information of high quality. Two high‐density SNP arrays relying on the Infinium iS …

Outlier loci highlight the direction of introgression in oaks

E Guichoux, P Garnier‐Géré, L Lagache… - Molecular …, 2013 - Wiley Online Library
Loci considered to be under selection are generally avoided in attempts to infer past
demographic processes as they do not fit neutral model assumptions. However …

Gene flow, spatial structure, local adaptation, and assisted migration in trees

KV Krutovsky, J Burczyk, I Chybicki, R Finkeldey… - Genomics of tree …, 2012 - Springer
Gene flow is a process of transferring and exchanging genetic material among groups of
organisms and is an important evolutionary factor that greatly affects genetic variation and …

High-throughput SNP genotyping in the highly heterozygous genome of Eucalyptus: assay success, polymorphism and transferability across species

D Grattapaglia, OB Silva-Junior, M Kirst, BM de Lima… - BMC plant biology, 2011 - Springer
Background High-throughput SNP genotyping has become an essential requirement for
molecular breeding and population genomics studies in plant species. Large scale SNP …