Sharing interoperable workflow provenance: A review of best practices and their practical application in CWLProv

FZ Khan, S Soiland-Reyes, RO Sinnott, A Lonie… - …, 2019 - academic.oup.com
Background The automation of data analysis in the form of scientific workflows has become
a widely adopted practice in many fields of research. Computationally driven data-intensive …

[HTML][HTML] Towards FAIR principles for research software

AL Lamprecht, L Garcia, M Kuzak, C Martinez… - Data …, 2020 - content.iospress.com
The FAIR Guiding Principles, published in 2016, aim to improve the findability, accessibility,
interoperability and reusability of digital research objects for both humans and machines …

Multisector dynamics: Advancing the science of complex adaptive human‐Earth systems

PM Reed, A Hadjimichael, RH Moss, C Brelsford… - Earth's …, 2022 - Wiley Online Library
Abstract The field of MultiSector Dynamics (MSD) explores the dynamics and co‐
evolutionary pathways of human and Earth systems with a focus on critical goods, services …

Pre‐exascale HPC approaches for molecular dynamics simulations. Covid‐19 research: A use case

M Wieczor, V Genna, J Aranda… - Wiley …, 2023 - Wiley Online Library
Exascale computing has been a dream for ages and is close to becoming a reality that will
impact how molecular simulations are being performed, as well as the quantity and quality of …

Automated evolutionary approach for the design of composite machine learning pipelines

NO Nikitin, P Vychuzhanin, M Sarafanov… - Future Generation …, 2022 - Elsevier
The effectiveness of the machine learning methods for real-world tasks depends on the
proper structure of the modeling pipeline. The proposed approach is aimed to automate the …

FAIR computational workflows

C Goble, S Cohen-Boulakia, S Soiland-Reyes… - Data …, 2020 - direct.mit.edu
Computational workflows describe the complex multi-step methods that are used for data
collection, data preparation, analytics, predictive modelling, and simulation that lead to new …

[HTML][HTML] Ten quick tips for building FAIR workflows

C de Visser, LF Johansson, P Kulkarni… - PLoS Computational …, 2023 - journals.plos.org
Research data is accumulating rapidly and with it the challenge of fully reproducible
science. As a consequence, implementation of high-quality management of scientific data …

StreamFlow: cross-breeding cloud with HPC

I Colonnelli, B Cantalupo, I Merelli… - IEEE Transactions on …, 2020 - ieeexplore.ieee.org
Workflows are among the most commonly used tools in a variety of execution environments.
Many of them target a specific environment; few of them make it possible to execute an …

Streamlining data-intensive biology with workflow systems

T Reiter, PT Brooks, L Irber, SEK Joslin, CM Reid… - …, 2021 - academic.oup.com
As the scale of biological data generation has increased, the bottleneck of research has
shifted from data generation to analysis. Researchers commonly need to build …

[HTML][HTML] The Bari Manifesto: An interoperability framework for essential biodiversity variables

AR Hardisty, WK Michener, D Agosti, EA García… - Ecological …, 2019 - Elsevier
Abstract Essential Biodiversity Variables (EBV) are fundamental variables that can be used
for assessing biodiversity change over time, for determining adherence to biodiversity policy …