Heme enzyme structure and function

TL Poulos - Chemical reviews, 2014 - ACS Publications
Metalloporphyrins are widely used throughout the biosphere, and of these heme (iron
protoporphyrin IX, Figure 1) is one of the most abundant and widely used. Heme shuttles …

Synthetic Fe/Cu complexes: toward understanding heme-copper oxidase structure and function

SM Adam, GB Wijeratne, PJ Rogler, DE Diaz… - Chemical …, 2018 - ACS Publications
Heme-copper oxidases (HCOs) are terminal enzymes on the mitochondrial or bacterial
respiratory electron transport chain, which utilize a unique heterobinuclear active site to …

MolProbity: more and better reference data for improved all‐atom structure validation

CJ Williams, JJ Headd, NW Moriarty… - Protein …, 2018 - Wiley Online Library
This paper describes the current update on macromolecular model validation services that
are provided at the MolProbity website, emphasizing changes and additions since the …

[HTML][HTML] The backrub motion: how protein backbone shrugs when a sidechain dances

IW Davis, WB Arendall, DC Richardson, JS Richardson - Structure, 2006 - cell.com
Surprisingly, the frozen structures from ultra-high-resolution protein crystallography reveal a
prevalent, but subtle, mode of local backbone motion coupled to much larger, two-state …

Classical catalase: ancient and modern

P Nicholls - Archives of biochemistry and biophysics, 2012 - Elsevier
This review describes the historical difficulties in devising a kinetically satisfactory
mechanism for the classical catalase after its identification as a unique catalytic entity in …

Thirty years of heme catalases structural biology

A Díaz, PC Loewen, I Fita, X Carpena - Archives of biochemistry and …, 2012 - Elsevier
About thirty years ago the crystal structures of the heme catalases from Penicillium vitale
(PVC) and, a few months later, from bovine liver (BLC) were published. Both enzymes were …

Structures of the high-valent metal-ion haem–oxygen intermediates in peroxidases, oxygenases and catalases

HP Hersleth, U Ryde, P Rydberg, CH Görbitz… - Journal of inorganic …, 2006 - Elsevier
Peroxidases, oxygenases and catalases have similar high-valent metal-ion intermediates in
their respective reaction cycles. In this review, haem-based examples will be discussed. The …

New tools in MolProbity validation: CaBLAM for CryoEM backbone, UnDowser to rethink “waters,” and NGL Viewer to recapture online 3D graphics

MG Prisant, CJ Williams, VB Chen… - Protein …, 2020 - Wiley Online Library
The MolProbity web service provides macromolecular model validation to help correct local
errors, for the structural biology community worldwide. Here we highlight new validation …

Application of Badger's Rule to Heme and Non-Heme Iron− Oxygen Bonds: An Examination of Ferryl Protonation States

MT Green - Journal of the American Chemical Society, 2006 - ACS Publications
To gain insight into the protonation state of enzymatic ferryl species we have examined the
applicability of Badger's rule to heme and non-heme iron− oxygen bonds. Using density …

[HTML][HTML] Monofunctional heme-catalases

W Hansberg - Antioxidants, 2022 - mdpi.com
The review focuses on four issues that are critical for the understanding of monofunctional
catalases. How hydrogen peroxide (H2O2) reaches the active site and outcompetes water …