3D cell culture systems modeling tumor growth determinants in cancer target discovery

CR Thoma, M Zimmermann, I Agarkova… - Advanced drug delivery …, 2014 - Elsevier
Phenotypic heterogeneity of cancer cells, cell biological context, heterotypic crosstalk and
the microenvironment are key determinants of the multistep process of tumor development …

Ubiquitin-like protein activation by E1 enzymes: the apex for downstream signalling pathways

BA Schulman, J Wade Harper - Nature reviews Molecular cell biology, 2009 - nature.com
Attachment of ubiquitin or ubiquitin-like proteins (known as UBLs) to their targets through
multienzyme cascades is a central mechanism to modulate protein functions. This process is …

The adaptive immune system is a major driver of selection for tumor suppressor gene inactivation

TD Martin, RS Patel, DR Cook, MY Choi, A Patil… - Science, 2021 - science.org
During tumorigenesis, tumors must evolve to evade the immune system and do so by
disrupting the genes involved in antigen processing and presentation or up-regulating …

Gene essentiality profiling reveals gene networks and synthetic lethal interactions with oncogenic Ras

T Wang, H Yu, NW Hughes, B Liu, A Kendirli, K Klein… - Cell, 2017 - cell.com
The genetic dependencies of human cancers widely vary. Here, we catalog this
heterogeneity and use it to identify functional gene interactions and genotype-dependent …

A CRISPR dropout screen identifies genetic vulnerabilities and therapeutic targets in acute myeloid leukemia

K Tzelepis, H Koike-Yusa, E De Braekeleer, Y Li… - Cell reports, 2016 - cell.com
Acute myeloid leukemia (AML) is an aggressive cancer with a poor prognosis, for which
mainstream treatments have not changed for decades. To identify additional therapeutic …

Chromatin-modifying enzymes as modulators of reprogramming

TT Onder, N Kara, A Cherry, AU Sinha, N Zhu… - Nature, 2012 - nature.com
Generation of induced pluripotent stem cells (iPSCs) by somatic cell reprogramming
involves global epigenetic remodelling. Whereas several proteins are known to regulate …

The nuclear deubiquitinase BAP1 is commonly inactivated by somatic mutations and 3p21. 1 losses in malignant pleural mesothelioma

M Bott, M Brevet, BS Taylor, S Shimizu, T Ito, L Wang… - Nature …, 2011 - nature.com
Malignant pleural mesotheliomas (MPMs) often show CDKN2A and NF2 inactivation, but
other highly recurrent mutations have not been described. To identify additional driver …

[HTML][HTML] Principles of cancer therapy: oncogene and non-oncogene addiction

J Luo, NL Solimini, SJ Elledge - Cell, 2009 - cell.com
Cancer is a complex collection of distinct genetic diseases united by common hallmarks.
Here, we expand upon the classic hallmarks to include the stress phenotypes of …

The pINDUCER lentiviral toolkit for inducible RNA interference in vitro and in vivo

KL Meerbrey, G Hu, JD Kessler… - Proceedings of the …, 2011 - National Acad Sciences
The discovery of RNAi has revolutionized loss-of-function genetic studies in mammalian
systems. However, significant challenges still remain to fully exploit RNAi for mammalian …

Prioritizing candidate disease genes by network-based boosting of genome-wide association data

I Lee, UM Blom, PI Wang, JE Shim… - Genome …, 2011 - genome.cshlp.org
Network “guilt by association”(GBA) is a proven approach for identifying novel disease
genes based on the observation that similar mutational phenotypes arise from functionally …