Single-cell RNA sequencing in cardiovascular development, disease and medicine

DT Paik, S Cho, L Tian, HY Chang… - Nature Reviews Cardiology, 2020 - nature.com
Advances in single-cell RNA sequencing (scRNA-seq) technologies in the past 10 years
have had a transformative effect on biomedical research, enabling the profiling and analysis …

Single-cell RNA sequencing with spatial transcriptomics of cancer tissues

R Ahmed, T Zaman, F Chowdhury, F Mraiche… - International journal of …, 2022 - mdpi.com
Single-cell RNA sequencing (RNA-seq) techniques can perform analysis of transcriptome at
the single-cell level and possess an unprecedented potential for exploring signatures …

Methods and insights from single-cell expression quantitative trait loci

JB Kang, A Raveane, A Nathan… - Annual review of …, 2023 - annualreviews.org
Recent advancements in single-cell technologies have enabled expression quantitative trait
locus (eQTL) analysis across many individuals at single-cell resolution. Compared with bulk …

Glioma stem cells: novel data obtained by single-cell sequencing

A Gisina, I Kholodenko, Y Kim, M Abakumov… - International journal of …, 2022 - mdpi.com
Glioma is the most common type of primary CNS tumor, composed of cells that resemble
normal glial cells. Recent genetic studies have provided insight into the inter-tumoral …

Single cell analysis in vascular biology

NW Chavkin, KK Hirschi - Frontiers in cardiovascular medicine, 2020 - frontiersin.org
The ability to quantify DNA, RNA, and protein variations at the single cell level has
revolutionized our understanding of cellular heterogeneity within tissues. Via such analyses …

Dynamic thresholding and tissue dissociation optimization for CITE-seq identifies differential surface protein abundance in metastatic melanoma

U Lischetti, A Tastanova, F Singer, L Grob… - Communications …, 2023 - nature.com
Multi-omics profiling by CITE-seq bridges the RNA-protein gap in single-cell analysis but
has been largely applied to liquid biopsies. Applying CITE-seq to clinically relevant solid …

A primer for single-cell sequencing in non-model organisms

JM Alfieri, G Wang, MM Jonika, CA Gill, H Blackmon… - Genes, 2022 - mdpi.com
Single-cell sequencing technologies have led to a revolution in our knowledge of the
diversity of cell types, connections between biological levels of organization, and …

Proteomics for low cell numbers: how to optimize the sample preparation workflow for mass spectrometry analysis

S Kassem, K van der Pan, AL de Jager… - Journal of Proteome …, 2021 - ACS Publications
Nowadays, massive genomics and transcriptomics data can be generated at the single-cell
level. However, proteomics in this setting is still a big challenge. Despite the great …

Perspectives on bulk-tissue RNA sequencing and single-cell RNA sequencing for cardiac transcriptomics

JC Hegenbarth, G Lezzoche, LJ De Windt… - Frontiers in Molecular …, 2022 - frontiersin.org
The heart has been the center of numerous transcriptomic studies in the past decade. Even
though our knowledge of the key organ in our cardiovascular system has significantly …

Approaches for single-cell RNA sequencing across tissues and cell types

P Sant, K Rippe, JP Mallm - Transcription, 2023 - Taylor & Francis
Single-cell sequencing of RNA (scRNA-seq) has advanced our understanding of cellular
heterogeneity and signaling in developmental biology and disease. A large number of …