Advances and applications of single-cell sequencing technologies

Y Wang, NE Navin - Molecular cell, 2015 - cell.com
Single-cell sequencing (SCS) has emerged as a powerful new set of technologies for
studying rare cells and delineating complex populations. Over the past 5 years, SCS …

Emergent properties of microbial activity in heterogeneous soil microenvironments: different research approaches are slowly converging, yet major challenges remain

PC Baveye, W Otten, A Kravchenko… - Frontiers in …, 2018 - frontiersin.org
Over the last 60 years, soil microbiologists have accumulated a wealth of experimental data
showing that the bulk, macroscopic parameters (eg, granulometry, pH, soil organic matter …

Th17 cell induction by adhesion of microbes to intestinal epithelial cells

K Atarashi, T Tanoue, M Ando, N Kamada, Y Nagano… - Cell, 2015 - cell.com
Intestinal Th17 cells are induced and accumulate in response to colonization with a
subgroup of intestinal microbes such as segmented filamentous bacteria (SFB) and certain …

Single-Cell Genomics Reveals Hundreds of Coexisting Subpopulations in Wild Prochlorococcus

N Kashtan, SE Roggensack, S Rodrigue… - Science, 2014 - science.org
Extensive genomic diversity within coexisting members of a microbial species has been
revealed through selected cultured isolates and metagenomic assemblies. Yet, the cell-by …

Role of intestinal microbiota and metabolites on gut homeostasis and human diseases

L Lin, J Zhang - BMC immunology, 2017 - Springer
Background A vast diversity of microbes colonizes in the human gastrointestinal tract,
referred to intestinal microbiota. Microbiota and products thereof are indispensable for …

The future is now: single-cell genomics of bacteria and archaea

PC Blainey - FEMS microbiology reviews, 2013 - academic.oup.com
Interest in the expanding catalog of uncultivated microorganisms, increasing recognition of
heterogeneity among seemingly similar cells, and technological advances in whole-genome …

Computational meta'omics for microbial community studies

N Segata, D Boernigen, TL Tickle… - Molecular systems …, 2013 - embopress.org
Complex microbial communities are an integral part of the Earth's ecosystem and of our
bodies in health and disease. In the last two decades, culture‐independent approaches …

Microfluidic single-cell whole-transcriptome sequencing

AM Streets, X Zhang, C Cao, Y Pang… - Proceedings of the …, 2014 - National Acad Sciences
Single-cell whole-transcriptome analysis is a powerful tool for quantifying gene expression
heterogeneity in populations of cells. Many techniques have, thus, been recently developed …

Soil exposure modifies the gut microbiota and supports immune tolerance in a mouse model

N Ottman, L Ruokolainen, A Suomalainen… - Journal of allergy and …, 2019 - Elsevier
Background Sufficient exposure to natural environments, in particular soil and its microbes,
has been suggested to be protective against allergies. Objective We aim at gaining more …

[HTML][HTML] Single cell genomics: an individual look at microbes

R Stepanauskas - Current opinion in microbiology, 2012 - Elsevier
Single cell genomics (SCG) uncovers hereditary information at the most basic level of
biological organization. It is emerging as a powerful complement to cultivation-based and …