Epigenome plasticity in plants

JPB Lloyd, R Lister - Nature Reviews Genetics, 2022 - nature.com
Plant intra-individual and inter-individual variation can be determined by the epigenome, a
set of covalent modifications of DNA and chromatin that can alter genome structure and …

Genomic imprinting in plants—revisiting existing models

RA Batista, C Köhler - Genes & development, 2020 - genesdev.cshlp.org
Genomic imprinting is an epigenetic phenomenon leading to parentally biased gene
expression. Throughout the years, extensive efforts have been made to characterize the …

Targeted reprogramming of H3K27me3 resets epigenetic memory in plant paternal chromatin

M Borg, Y Jacob, D Susaki, C LeBlanc, D Buendía… - Nature cell …, 2020 - nature.com
Epigenetic marks are reprogrammed in the gametes to reset genomic potential in the next
generation. In mammals, paternal chromatin is extensively reprogrammed through the …

Dynamic transcriptome landscape of maize embryo and endosperm development

J Chen, B Zeng, M Zhang, S Xie, G Wang… - Plant …, 2014 - academic.oup.com
Maize (Zea mays) is an excellent cereal model for research on seed development because
of its relatively large size for both embryo and endosperm. Despite the importance of seed in …

Genome-wide discovery and characterization of maize long non-coding RNAs

L Li, SR Eichten, R Shimizu, K Petsch, CT Yeh, W Wu… - Genome biology, 2014 - Springer
Abstract Background Long non-coding RNAs (lncRNAs) are transcripts that are 200 bp or
longer, do not encode proteins, and potentially play important roles in eukaryotic gene …

Comprehensive mechanism of gene silencing and its role in plant growth and development

AH El-Sappah, K Yan, Q Huang, MM Islam… - Frontiers in Plant …, 2021 - frontiersin.org
Gene silencing is a negative feedback mechanism that regulates gene expression to define
cell fate and also regulates metabolism and gene expression throughout the life of an …

The polycomb group protein regulatory network

I Mozgova, L Hennig - Annual review of plant biology, 2015 - annualreviews.org
Correct expression of specific sets of genes in time and space ensures the establishment
and maintenance of cell identity, which is required for proper development of multicellular …

Epigenome-wide inheritance of cytosine methylation variants in a recombinant inbred population

RJ Schmitz, Y He, O Valdés-López, SM Khan… - Genome …, 2013 - genome.cshlp.org
Cytosine DNA methylation is one avenue for passing information through cell divisions.
Here, we present epigenomic analyses of soybean recombinant inbred lines (RILs) and their …

Genome-wide mapping of transcriptional enhancer candidates using DNA and chromatin features in maize

R Oka, J Zicola, B Weber, SN Anderson, C Hodgman… - Genome biology, 2017 - Springer
Background While most cells in multicellular organisms carry the same genetic information,
in each cell type only a subset of genes is being transcribed. Such differentiation in gene …

High-quality genome and methylomes illustrate features underlying evolutionary success of oaks

VL Sork, SJ Cokus, ST Fitz-Gibbon, AV Zimin… - Nature …, 2022 - nature.com
The genus Quercus, which emerged∼ 55 million years ago during globally warm
temperatures, diversified into∼ 450 extant species. We present a high-quality de novo …