An overview of genome organization and how we got there: from FISH to Hi-C

J Fraser, I Williamson, WA Bickmore… - … and Molecular Biology …, 2015 - Am Soc Microbiol
In humans, nearly two meters of genomic material must be folded to fit inside each
micrometer-scale cell nucleus while remaining accessible for gene transcription, DNA …

Transient protein–protein interactions

SE Acuner Ozbabacan, HB Engin… - … , Design & Selection, 2011 - academic.oup.com
Transient complexes are crucial for diverse biological processes such as biochemical
pathways and signaling cascades in the cell. Here, we give an overview of the transient …

A high-density map for navigating the human polycomb complexome

S Hauri, F Comoglio, M Seimiya, M Gerstung, T Glatter… - Cell reports, 2016 - cell.com
Polycomb group (PcG) proteins are major determinants of gene silencing and epigenetic
memory in higher eukaryotes. Here, we systematically mapped the human PcG complexome …

SETDB1: a novel KAP-1-associated histone H3, lysine 9-specific methyltransferase that contributes to HP1-mediated silencing of euchromatic genes by KRAB zinc …

DC Schultz, K Ayyanathan, D Negorev… - Genes & …, 2002 - genesdev.cshlp.org
Posttranslational modification of histones has emerged as a key regulatory signal in
eukaryotic gene expression. Recent genetic and biochemical studies link H3-lysine 9 (H3 …

[HTML][HTML] Posttranslational mechanisms regulate the mammalian circadian clock

C Lee, JP Etchegaray, FRA Cagampang, ASI Loudon… - Cell, 2001 - cell.com
We have examined posttranslational regulation of clock proteins in mouse liver in vivo. The
mouse PERIOD proteins (mPER1 and mPER2), CLOCK, and BMAL1 undergo robust …

The methyl-CpG-binding protein MeCP2 links DNA methylation to histone methylation

F Fuks, PJ Hurd, D Wolf, X Nan, AP Bird… - Journal of Biological …, 2003 - ASBMB
DNA methylation plays an important role in mammalian development and correlates with
chromatin-associated gene silencing. The recruitment of MeCP2 to methylated CpG …

Different phosphorylated forms of RNA polymerase II and associated mRNA processing factors during transcription

P Komarnitsky, EJ Cho, S Buratowski - Genes & development, 2000 - genesdev.cshlp.org
The activities of several mRNA processing factors are coupled to transcription through
binding to RNA polymerase II (Pol II). The largest subunit of Pol II contains a repetitive …

[HTML][HTML] Notch signaling is a direct determinant of keratinocyte growth arrest and entry into differentiation

A Rangarajan, C Talora, R Okuyama, M Nicolas… - The EMBO …, 2001 - embopress.org
The role of Notch signaling in growth/differentiation control of mammalian epithelial cells is
still poorly defined. We show that keratinocyte‐specific deletion of the Notch1 gene results in …

A versatile nanotrap for biochemical and functional studies with fluorescent fusion proteins

U Rothbauer, K Zolghadr, S Muyldermans… - Molecular & Cellular …, 2008 - ASBMB
Green fluorescent proteins (GFPs) and variants thereof are widely used to study protein
localization and dynamics. We engineered a specific binder for fluorescent proteins based …

Protocol for the fast chromatin immunoprecipitation (ChIP) method

JD Nelson, O Denisenko, K Bomsztyk - Nature protocols, 2006 - nature.com
Chromatin and transcriptional processes are among the most intensively studied fields of
biology today. The introduction of chromatin immunoprecipitations (ChIP) represents a major …