[HTML][HTML] T-cell dependent immunogenicity of protein therapeutics: preclinical assessment and mitigation

V Jawa, LP Cousens, M Awwad, E Wakshull… - Clinical …, 2013 - Elsevier
Protein therapeutics hold a prominent and rapidly expanding place among medicinal
products. Purified blood products, recombinant cytokines, growth factors, enzyme …

Molecular dynamics, monte carlo simulations, and langevin dynamics: a computational review

E Paquet, HL Viktor - BioMed research international, 2015 - Wiley Online Library
Macromolecular structures, such as neuraminidases, hemagglutinins, and monoclonal
antibodies, are not rigid entities. Rather, they are characterised by their flexibility, which is …

Predicting antigen specificity of single T cells based on TCR CDR 3 regions

DS Fischer, Y Wu, B Schubert, FJ Theis - Molecular systems biology, 2020 - embopress.org
It has recently become possible to simultaneously assay T‐cell specificity with respect to
large sets of antigens and the T‐cell receptor sequence in high‐throughput single‐cell …

Predicting epitopes for vaccine development using bioinformatics tools

V Yurina, OR Adianingsih - Therapeutic advances in …, 2022 - journals.sagepub.com
Epitope-based DNA vaccine development is one application of bioinformatics or in silico
studies, that is, computational methods, including mathematical, chemical, and biological …

Machine learning methods for protein-protein binding affinity prediction in protein design

Z Guo, R Yamaguchi - Frontiers in Bioinformatics, 2022 - frontiersin.org
Protein-protein interactions govern a wide range of biological activity. A proper estimation of
the protein-protein binding affinity is vital to design proteins with high specificity and binding …

Structure-based methods for binding mode and binding affinity prediction for peptide-MHC complexes

DA Antunes, JR Abella, D Devaurs… - Current topics in …, 2018 - ingentaconnect.com
Understanding the mechanisms involved in the activation of an immune response is
essential to many fields in human health, including vaccine development and personalized …

Immunoinformatics: a brief review

N Tomar, RK De - Immunoinformatics, 2014 - Springer
A large volume of data relevant to immunology research has accumulated due to
sequencing of genomes of the human and other model organisms. At the same time, huge …

Current status and future challenges in T-cell receptor/peptide/MHC molecular dynamics simulations

B Knapp, S Demharter, R Esmaielbeiki… - Briefings in …, 2015 - academic.oup.com
The interaction between T-cell receptors (TCRs) and major histocompatibility complex
(MHC)-bound epitopes is one of the most important processes in the adaptive human …

Computational modelling approaches to vaccinology

F Pappalardo, D Flower, G Russo, M Pennisi… - Pharmacological …, 2015 - Elsevier
Abstract Excepting the Peripheral and Central Nervous Systems, the Immune System is the
most complex of somatic systems in higher animals. This complexity manifests itself at many …

Designing immunogenic peptides

DR Flower - Nature chemical biology, 2013 - nature.com
Peptides fulfill many roles in immunology, yet none are more important than their role as
immunogenic epitopes driving the adaptive immune response, our ultimate bulwark against …