A 4D single-cell protein atlas of transcription factors delineates spatiotemporal patterning during embryogenesis

X Ma, Z Zhao, L Xiao, W Xu, Y Kou, Y Zhang, G Wu… - Nature …, 2021 - nature.com
Complex biological processes such as embryogenesis require precise coordination of cell
differentiation programs across both space and time. Using protein-fusion fluorescent …

Live imaging and modeling of inner nuclear membrane targeting reveals its molecular requirements in mammalian cells

A Boni, AZ Politi, P Strnad, W Xiang, MJ Hossain… - Journal of Cell …, 2015 - rupress.org
Targeting of inner nuclear membrane (INM) proteins is essential for nuclear architecture and
function, yet its mechanism remains poorly understood. Here, we established a new reporter …

Methods for compensation of the light attenuation with depth of images captured by a confocal microscope

M Čapek, J Janáček, L Kubínová - Microscopy research and …, 2006 - Wiley Online Library
A confocal laser scanning microscope (CLSM) enables us to capture images from a
biological specimen in different depths and obtain a series of precisely registered …

A lineage-resolved cartography of microRNA promoter activity in C. elegans empowers multidimensional developmental analysis

W Xu, J Liu, H Qi, R Si, Z Zhao, Z Tao, Y Bai… - Nature …, 2024 - nature.com
Elucidating the expression of microRNAs in developing single cells is critical for functional
discovery. Here, we construct scCAMERA (single-cell cartography of microRNA expression …

Integration of biological data by kernels on graph nodes allows prediction of new genes involved in mitotic chromosome condensation

JK Hériché, JG Lees, I Morilla, T Walter… - Molecular biology of …, 2014 - Am Soc Cell Biol
The advent of genome-wide RNA interference (RNAi)–based screens puts us in the position
to identify genes for all functions human cells carry out. However, for many functions, assay …

Cartography of cell morphology in tomato pericarp at the fruit scale

D Legland, MF DEVAUX, B Bouchet… - Journal of …, 2012 - Wiley Online Library
In fleshy fruits, the variability of cell morphology at the fruit scale is largely unknown. It
presents both a huge variability and a high level of organization. Better knowledge of cell …

Cell Geometry Guides the Dynamic Targeting of Apoplastic GPI-Linked Lipid Transfer Protein to Cell Wall Elements and Cell Borders in Arabidopsis thaliana

C Ambrose, A DeBono, G Wasteneys - PLoS One, 2013 - journals.plos.org
During cellular morphogenesis, changes in cell shape and cell junction topology are
fundamental to normal tissue and organ development. Here we show that apoplastic …

Understanding the fundamental mechanisms of biofilms development and dispersal: BIAM (Biofilm Intensity and Architecture Measurement), a new tool for studying …

M Baudin, B Cinquin, B Sclavi, D Pareau… - Journal of Microbiological …, 2017 - Elsevier
Confocal laser scanning microscopy (CLSM) is one of the most relevant technologies for
studying biofilms in situ. Several tools have been developed to investigate and quantify the …

Single‐cell dynamics of chromatin activity during cell lineage differentiation in Caenorhabditis elegans embryos

Z Zhao, R Fan, W Xu, Y Kou, Y Wang… - Molecular Systems …, 2021 - embopress.org
Elucidating the chromatin dynamics that orchestrate embryogenesis is a fundamental
question in developmental biology. Here, we exploit position effects on expression as an …

Quantification of collagen orientation in 3D engineered tissue

F Daniels, BM ter Haar Romeny, M Rubbens… - 3rd Kuala Lumpur …, 2007 - Springer
Tissue engineered heart valves are a promising alternative for current heart valve
replacements. However, the mechanical properties of these valves are insufficient for …