Exploring the human microbiome: the potential future role of next-generation sequencing in disease diagnosis and treatment

MA Malla, A Dubey, A Kumar, S Yadav… - Frontiers in …, 2019 - frontiersin.org
The interaction between the human microbiome and immune system has an effect on
several human metabolic functions and impacts our well-being. Additionally, the interaction …

The population genetics of commensal Escherichia coli

O Tenaillon, D Skurnik, B Picard… - Nature reviews …, 2010 - nature.com
The primary habitat of Escherichia coli is the vertebrate gut, where it is the predominant
aerobic organism, living in symbiosis with its host. Despite the occurrence of recombination …

The cityscapes dataset for semantic urban scene understanding

M Cordts, M Omran, S Ramos… - Proceedings of the …, 2016 - openaccess.thecvf.com
Visual understanding of complex urban street scenes is an enabling factor for a wide range
of applications. Object detection has benefited enormously from large-scale datasets …

Performance assessment of DNA sequencing platforms in the ABRF Next-Generation Sequencing Study

J Foox, SW Tighe, CM Nicolet, JM Zook… - Nature …, 2021 - nature.com
Assessing the reproducibility, accuracy and utility of massively parallel DNA sequencing
platforms remains an ongoing challenge. Here the Association of Biomolecular Resource …

Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species

OS Kim, YJ Cho, K Lee, SH Yoon… - … of systematic and …, 2012 - microbiologyresearch.org
Despite recent advances in commercially optimized identification systems, bacterial
identification remains a challenging task in many routine microbiological laboratories …

Transcriptome analysis using next-generation sequencing

KO Mutz, A Heilkenbrinker, M Lönne, JG Walter… - Current opinion in …, 2013 - Elsevier
Up to date research in biology, biotechnology, and medicine requires fast genome and
transcriptome analysis technologies for the investigation of cellular state, physiology, and …

[HTML][HTML] Marine actinomycetes: an ongoing source of novel bioactive metabolites

R Subramani, W Aalbersberg - Microbiological research, 2012 - Elsevier
Actinomycetes are virtually unlimited sources of novel compounds with many therapeutic
applications and hold a prominent position due to their diversity and proven ability to …

Simultaneous assay of every Salmonella Typhi gene using one million transposon mutants

GC Langridge, MD Phan, DJ Turner… - Genome …, 2009 - genome.cshlp.org
Very high-throughput sequencing technologies need to be matched by high-throughput
functional studies if we are to make full use of the current explosion in genome sequences …

Characterization of a biogas-producing microbial community by short-read next generation DNA sequencing

R Wirth, E Kovács, G Maróti, Z Bagi, G Rákhely… - Biotechnology for …, 2012 - Springer
Background Renewable energy production is currently a major issue worldwide. Biogas is a
promising renewable energy carrier as the technology of its production combines the …

Routine use of microbial whole genome sequencing in diagnostic and public health microbiology

CU Köser, MJ Ellington, EJP Cartwright, SH Gillespie… - 2012 - journals.plos.org
Whole genome sequencing (WGS) promises to be transformative for the practice of clinical
microbiology, and the rapidly falling cost and turnaround time mean that this will become a …