Global disparities in SARS-CoV-2 genomic surveillance

AF Brito, E Semenova, G Dudas, GW Hassler… - Nature …, 2022 - nature.com
Genomic sequencing is essential to track the evolution and spread of SARS-CoV-2, optimize
molecular tests, treatments, vaccines, and guide public health responses. To investigate the …

Genome wide association study of Escherichia coli bloodstream infection isolates identifies genetic determinants for the portal of entry but not fatal outcome

E Denamur, B Condamine, M Esposito-Farese… - PLoS …, 2022 - journals.plos.org
Escherichia coli is an important cause of bloodstream infections (BSI), which is of concern
given its high mortality and increasing worldwide prevalence. Finding bacterial genetic …

Regional importation and asymmetric within-country spread of SARS-CoV-2 variants of concern in the Netherlands

AX Han, E Kozanli, J Koopsen, H Vennema, K Hajji… - Elife, 2022 - elifesciences.org
Background: Variants of concern (VOCs) of SARS-CoV-2 have caused resurging waves of
infections worldwide. In the Netherlands, the Alpha, Beta, Gamma, and Delta VOCs …

Rapid and flexible RT-qPCR surveillance platforms to detect SARS-CoV-2 mutations

K Spiess, V Gunalan, E Marving, SH Nielsen… - Microbiology …, 2023 - Am Soc Microbiol
Multiple mutations in severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
variants of concern (VOCs) increase transmission, disease severity, and immune evasion …

Rapid surveillance platforms for key SARS-CoV-2 mutations in Denmark

K Spiess, V Gunalan, E Marving, SH Nielsen… - medRxiv, 2021 - medrxiv.org
Multiple mutations in SARS-CoV-2 variants of concern (VOCs) may increase, transmission,
disease severity, immune evasion and facilitate zoonotic or anthoprozoonotic infections …

The impact of global lineage dynamics, border restrictions, and emergence of the B. 1.1. 7 lineage on the SARS-CoV-2 epidemic in Norway

MN Osnes, K Alfsnes, J Bråte, I Garcia, RK Riis… - Virus …, 2021 - academic.oup.com
As the COVID-19 pandemic swept through an immunologically naïve human population,
academics and public health professionals scrambled to establish methods and platforms …

Genome wide association study of human bacteremia Escherichia coli isolates identifies genetic determinants for the portal of entry but not fatal outcome

E Denamur, B Condamine, M Esposito-Farèse… - medRxiv, 2021 - medrxiv.org
Escherichia coli is an important cause of bloodstream infections (BSI), which is of concern
given its high mortality and increasing worldwide prevalence. Finding bacterial genetic …

[HTML][HTML] A Danish hospital outbreak of SARS-CoV-2. Combining whole-genome sequencing with epidemiological links offers surprising new information

B Olesen, TA Hansen, VM Hansen… - The Journal of …, 2021 - ncbi.nlm.nih.gov
In relation to a recent paper describing transmission of SARS-CoV-2 among healthcare
workers and patients in a teaching hospital in the Netherlands confirmed by wholegenome …