The role of methylation of DNA in environmental adaptation

KB Flores, F Wolschin, GV Amdam - 2013 - academic.oup.com
Methylation of DNA is an epigenetic mechanism that influences patterns of gene expression.
DNA methylation marks contribute to adaptive phenotypic variation but are erased during …

Characterization and Comparative Analysis of Chloroplast Genomes in Five Uncaria Species Endemic to China

MM Chen, M Zhang, ZS Liang, QL He - International journal of molecular …, 2022 - mdpi.com
Uncaria, a perennial vine from the Rubiaceae family, is a typical Chinese traditional
medicine. Currently, uncertainty exists over the Uncaria genus' evolutionary relationships …

A comparison of synonymous codon usage bias patterns in DNA and RNA virus genomes: quantifying the relative importance of mutational pressure and natural …

Y Chen - BioMed research international, 2013 - Wiley Online Library
Codon usage bias patterns have been broadly explored for many viruses. However, the
relative importance of mutation pressure and natural selection is still under debate. In the …

Genome-wide survey and analysis of microsatellite sequences in bovid species

WH Qi, XM Jiang, LM Du, GS Xiao, TZ Hu, BS Yue… - PLoS …, 2015 - journals.plos.org
Microsatellites or simple sequence repeats (SSRs) have become the most popular source of
genetic markers, which are ubiquitously distributed in many eukaryotic and prokaryotic …

High GC content of simple sequence repeats in Herpes simplex virus type 1 genome

Q Ouyang, X Zhao, H Feng, Y Tian, D Li, M Li, Z Tan - Gene, 2012 - Elsevier
The presence, locations and composition of simple sequence repeats (SSRs) in Herpes
simplex virus type 1 (HSV-1) genome were extracted and analyzed by using the software …

Global and local genomic features together modulate the spontaneous single nucleotide mutation rate

A Ajay, T Begum, A Arya, K Kumar, S Ahmad - Computational Biology and …, 2024 - Elsevier
Spontaneous mutations are evolutionary engines as they generate variants for the
evolutionary downstream processes that give rise to speciation and adaptation. Single …

[HTML][HTML] Comparative bioinformatics analysis of the chloroplast genomes of a wild diploid Gossypium and two cultivated allotetraploid species

F Talat, K Wang - Iranian Journal of Biotechnology, 2015 - ncbi.nlm.nih.gov
Background Gossypium thurberi is a wild diploid species that has been used to improve
cultivated allotetraploid cotton. G. thurberi belongs to D genome, which is an important wild …

Percent of highly immunogenic amino acid residues forming B-cell epitopes is higher in homologous proteins encoded by GC-rich genes

VV Khrustalev, EV Barkovsky - Journal of theoretical biology, 2011 - Elsevier
We analyzed the dependence of the percent of highly immunogenic amino acid residues
included in B-cell epitopes of homologous proteins on the GC-content (G+ C) of genes …

Unusual nucleotide content of Rubella virus genome as a consequence of biased RNA-editing: comparison with Alphaviruses

VV Khrustalev, EV Barkovsky - International journal of …, 2011 - inderscienceonline.com
The usage of cytosine in third codon positions of 22 complete Rubella virus genomes
(52.4%) is significantly higher than the usage of guanine (28.9%), adenine (6.9%) and uracil …

[图书][B] Биохимические механизмы мутационного давления в методологии вычислительной биологии

ВВ Хрусталев - 2010 - rep.bsmu.by
Посвящена описанию многочисленных биохимических аспектов мутационного
давления, биоинформатических методов его изучения и применению знаний о данных …