Next-generation sequencing: insights to advance clinical investigations of the microbiome
CR Wensel, JL Pluznick, SL Salzberg… - The Journal of clinical …, 2022 - Am Soc Clin Investig
Next-generation sequencing (NGS) technology has advanced our understanding of the
human microbiome by allowing for the discovery and characterization of unculturable …
human microbiome by allowing for the discovery and characterization of unculturable …
Recent developments in the study of plant microbiomes
BR Glick, E Gamalero - Microorganisms, 2021 - mdpi.com
To date, an understanding of how plant growth-promoting bacteria facilitate plant growth has
been primarily based on studies of individual bacteria interacting with plants under different …
been primarily based on studies of individual bacteria interacting with plants under different …
Spatial metatranscriptomics resolves host–bacteria–fungi interactomes
The interactions of microorganisms among themselves and with their multicellular host take
place at the microscale, forming complex networks and spatial patterns. Existing technology …
place at the microscale, forming complex networks and spatial patterns. Existing technology …
The phyllosphere microbiome shifts toward combating melanose pathogen
Background Plants can recruit beneficial microbes to enhance their ability to defend against
pathogens. However, in contrast to the intensively studied roles of the rhizosphere …
pathogens. However, in contrast to the intensively studied roles of the rhizosphere …
Metagenomic tools in microbial ecology research
Ability to directly sequence DNA from the environment permanently changed microbial
ecology. Here, we review the new insights to microbial life gleaned from the applications of …
ecology. Here, we review the new insights to microbial life gleaned from the applications of …
Comparative analysis of 16S rRNA gene and metagenome sequencing in pediatric gut microbiomes
The colonization of the human gut microbiome begins at birth, and over time, these microbial
communities become increasingly complex. Most of what we currently know about the …
communities become increasingly complex. Most of what we currently know about the …
Daring to be differential: metabarcoding analysis of soil and plant-related microbial communities using amplicon sequence variants and operational taxonomical units
Background Microorganisms are not only indispensable to ecosystem functioning, they are
also keystones for emerging technologies. In the last 15 years, the number of studies on …
also keystones for emerging technologies. In the last 15 years, the number of studies on …
Accurate and sensitive detection of microbial eukaryotes from whole metagenome shotgun sequencing
AL Lind, KS Pollard - Microbiome, 2021 - Springer
Background Microbial eukaryotes are found alongside bacteria and archaea in natural
microbial systems, including host-associated microbiomes. While microbial eukaryotes are …
microbial systems, including host-associated microbiomes. While microbial eukaryotes are …
Communication between plants and rhizosphere microbiome: exploring the root microbiome for sustainable agriculture
Plant roots host numerous microorganisms around and inside their roots, forming a
community known as the root microbiome. An increasing bulk of research is underlining the …
community known as the root microbiome. An increasing bulk of research is underlining the …
[HTML][HTML] Host-gut microbiota metabolic interactions and their role in precision diagnosis and treatment of gastrointestinal cancers
The critical role of the gut microbiome in gastrointestinal cancers is becoming increasingly
clear. Imbalances in the gut microbial community, referred to as dysbiosis, are linked to …
clear. Imbalances in the gut microbial community, referred to as dysbiosis, are linked to …