Bibliometric review of ATAC-Seq and its application in gene expression

L Luo, M Gribskov, S Wang - Briefings in Bioinformatics, 2022 - academic.oup.com
With recent advances in high-throughput next-generation sequencing, it is possible to
describe the regulation and expression of genes at multiple levels. An assay for transposase …

Next-generation sequencing applications for the study of fungal pathogens

S Jiang, Y Chen, S Han, L Lv, L Li - Microorganisms, 2022 - mdpi.com
Next-generation sequencing (NGS) has become a widely used technology in biological
research. NGS applications for clinical pathogen detection have become vital technologies …

Mettl3-mediated mRNA m6A modification controls postnatal liver development by modulating the transcription factor Hnf4a

Y Xu, Z Zhou, X Kang, L Pan, C Liu, X Liang… - Nature …, 2022 - nature.com
Hepatic specification and functional maturation are tightly controlled throughout
development. N6-methyladenosine (m6A) is the most abundant RNA modification of …

Polystyrene nanoplastics induce apoptosis, autophagy, and steroidogenesis disruption in granulosa cells to reduce oocyte quality and fertility by inhibiting the PI3K …

Y Xue, X Cheng, ZQ Ma, HP Wang, C Zhou, J Li… - Journal of …, 2024 - Springer
Abstract Background Nanoplastics (NPs) are emerging pollutants that pose risks to living
organisms. Recent findings have unveiled the reproductive harm caused by polystyrene …

CTCF chromatin residence time controls three-dimensional genome organization, gene expression and DNA methylation in pluripotent cells

W Soochit, F Sleutels, G Stik, M Bartkuhn, S Basu… - Nature cell …, 2021 - nature.com
The 11 zinc finger (ZF) protein CTCF regulates topologically associating domain formation
and transcription through selective binding to thousands of genomic sites. Here, we …

[HTML][HTML] Large DNA methylation nadirs anchor chromatin loops maintaining hematopoietic stem cell identity

X Zhang, M Jeong, X Huang, XQ Wang, X Wang… - Molecular cell, 2020 - cell.com
Higher-order chromatin structure and DNA methylation are implicated in multiple
developmental processes, but their relationship to cell state is unknown. Here, we find that …

Assessment of organic acid accumulation and its related genes in peach

B Zheng, L Zhao, X Jiang, S Cherono, JJ Liu, C Ogutu… - Food chemistry, 2021 - Elsevier
Fruit acidity is an important determinant of peach organoleptic quality, but its regulatory
mechanism remains elusive. Measurement of organic acids in ripe fruits of seventy-five …

The m6A methyltransferase Mettl3 deficiency attenuates hepatic stellate cell activation and liver fibrosis

Y Li, X Kang, Z Zhou, L Pan, H Chen, X Liang, J Chu… - Molecular therapy, 2022 - cell.com
Activation of hepatic stellate cells (HSCs) is a central driver of liver fibrosis. Previous
investigations have identified various altered epigenetic landscapes during the cellular …

Cancer-associated fibroblasts activated by miR-196a promote the migration and invasion of lung cancer cells

S Lee, JH Hong, JS Kim, JS Yoon, SH Chun, SA Hong… - Cancer letters, 2021 - Elsevier
Fibroblasts in the tumor microenvironment, known as cancer-associated fibroblasts (CAFs),
promote the migration, invasion, and metastasis of cancer cells when they are activated …

Transcriptome Profiles Reveal the Growth-Promoting Mechanisms of Paenibacillus polymyxa YC0136 on Tobacco (Nicotiana tabacum L.)

H Liu, J Wang, H Sun, X Han, Y Peng, J Liu… - Frontiers in …, 2020 - frontiersin.org
Paenibacillus polymyxa is an important member of the plant growth-promoting rhizobacteria.
P. polymyxa YC0136 inoculation had beneficial effect on growth promotion and biological …