Ecological modelling approaches for predicting emergent properties in microbial communities

NI van den Berg, D Machado, S Santos… - Nature ecology & …, 2022 - nature.com
Recent studies have brought forward the critical role of emergent properties in shaping
microbial communities and the ecosystems of which they are a part. Emergent properties …

Next generation sequencing approaches to evaluate water and wastewater quality

E Garner, BC Davis, E Milligan, MF Blair, I Keenum… - Water Research, 2021 - Elsevier
The emergence of next generation sequencing (NGS) is revolutionizing the potential to
address complex microbiological challenges in the water industry. NGS technologies can …

[HTML][HTML] Expansive microbial metabolic versatility and biodiversity in dynamic Guaymas Basin hydrothermal sediments

N Dombrowski, AP Teske, BJ Baker - Nature communications, 2018 - nature.com
Abstract Microbes in Guaymas Basin (Gulf of California) hydrothermal sediments thrive on
hydrocarbons and sulfur and experience steep, fluctuating temperature and chemical …

Linking metagenomics to aquatic microbial ecology and biogeochemical cycles

HP Grossart, R Massana, KD McMahon… - Limnology and …, 2020 - Wiley Online Library
Microbial communities are essential components of aquatic ecosystems through their
contribution to food web dynamics and biogeochemical processes. Aquatic microbial …

Adaptive genetic traits in pelagic freshwater microbes

MC Chiriac, M Haber… - Environmental …, 2023 - Wiley Online Library
Pelagic microbes have adopted distinct strategies to inhabit the pelagial of lakes and
oceans and can be broadly categorized in two groups: free‐living, specialized oligotrophs …

Prospects for multi-omics in the microbial ecology of water engineering

EA McDaniel, SA Wahl, S Ishii, A Pinto, R Ziels… - Water Research, 2021 - Elsevier
Advances in high-throughput sequencing technologies and bioinformatics approaches over
almost the last three decades have substantially increased our ability to explore …

[HTML][HTML] Using metabolic networks to resolve ecological properties of microbiomes

EEL Muller, K Faust, S Widder, M Herold… - Current Opinion in …, 2018 - Elsevier
The systematic collection, integration and modelling of high-throughput molecular data
(multi-omics) allows the detailed characterisation of microbiomes in situ. Through metabolic …

Ecophysiology of freshwater Verrucomicrobia inferred from metagenome-assembled genomes

S He, SLR Stevens, LK Chan, S Bertilsson… - Msphere, 2017 - Am Soc Microbiol
Microbes are critical in carbon and nutrient cycling in freshwater ecosystems. Members of
the Verrucomicrobia are ubiquitous in such systems, and yet their roles and ecophysiology …

Heme auxotrophy in abundant aquatic microbial lineages

S Kim, I Kang, JW Lee, CO Jeon… - Proceedings of the …, 2021 - National Acad Sciences
Heme, a porphyrin ring complexed with iron, is a metalloprosthetic group of numerous
proteins involved in diverse metabolic and respiratory processes across all domains of life …

TaxAss: leveraging a custom freshwater database achieves fine-scale taxonomic resolution

RR Rohwer, JJ Hamilton, RJ Newton, KD McMahon - Msphere, 2018 - Am Soc Microbiol
Taxonomy assignment of freshwater microbial communities is limited by the minimally
curated phylogenies used for large taxonomy databases. Here we introduce TaxAss, a …