Computational optimal transport: With applications to data science

G Peyré, M Cuturi - Foundations and Trends® in Machine …, 2019 - nowpublishers.com
Optimal transport (OT) theory can be informally described using the words of the French
mathematician Gaspard Monge (1746–1818): A worker with a shovel in hand has to move a …

{Euclidean, metric, and Wasserstein} gradient flows: an overview

F Santambrogio - Bulletin of Mathematical Sciences, 2017 - Springer
This is an expository paper on the theory of gradient flows, and in particular of those PDEs
which can be interpreted as gradient flows for the Wasserstein metric on the space of …

Wasserstein auto-encoders

I Tolstikhin, O Bousquet, S Gelly… - arXiv preprint arXiv …, 2017 - arxiv.org
We propose the Wasserstein Auto-Encoder (WAE)---a new algorithm for building a
generative model of the data distribution. WAE minimizes a penalized form of the …

Estimating individual treatment effect: generalization bounds and algorithms

U Shalit, FD Johansson… - … conference on machine …, 2017 - proceedings.mlr.press
There is intense interest in applying machine learning to problems of causal inference in
fields such as healthcare, economics and education. In particular, individual-level causal …

Class-aware sample reweighting optimal transport for multi-source domain adaptation

S Wang, B Wang, Z Zhang, AA Heidari, H Chen - Neurocomputing, 2023 - Elsevier
Abstract Multi-Source Domain Adaptation (MSDA) techniques have attracted widespread
attention due to their availability to transfer knowledge from multiple source domains to the …

POUF: Prompt-oriented unsupervised fine-tuning for large pre-trained models

K Tanwisuth, S Zhang, H Zheng… - … on Machine Learning, 2023 - proceedings.mlr.press
Through prompting, large-scale pre-trained models have become more expressive and
powerful, gaining significant attention in recent years. Though these big models have zero …

Reconstructing growth and dynamic trajectories from single-cell transcriptomics data

Y Sha, Y Qiu, P Zhou, Q Nie - Nature Machine Intelligence, 2024 - nature.com
Time-series single-cell RNA sequencing (scRNA-seq) datasets provide unprecedented
opportunities to learn dynamic processes of cellular systems. Due to the destructive nature …

Scaling algorithms for unbalanced optimal transport problems

L Chizat, G Peyré, B Schmitzer, FX Vialard - Mathematics of Computation, 2018 - ams.org
This article introduces a new class of fast algorithms to approximate variational problems
involving unbalanced optimal transport. While classical optimal transport considers only …

Action matching: Learning stochastic dynamics from samples

K Neklyudov, R Brekelmans… - … on machine learning, 2023 - proceedings.mlr.press
Learning the continuous dynamics of a system from snapshots of its temporal marginals is a
problem which appears throughout natural sciences and machine learning, including in …

Stabilized sparse scaling algorithms for entropy regularized transport problems

B Schmitzer - SIAM Journal on Scientific Computing, 2019 - SIAM
Scaling algorithms for entropic transport-type problems have become a very popular
numerical method, encompassing Wasserstein barycenters, multimarginal problems …