Global organization and proposed megataxonomy of the virus world

EV Koonin, VV Dolja, M Krupovic… - Microbiology and …, 2020 - Am Soc Microbiol
Viruses and mobile genetic elements are molecular parasites or symbionts that coevolve
with nearly all forms of cellular life. The route of virus replication and protein expression is …

Transposable element regulation and expression in cancer

EE Grundy, N Diab, KB Chiappinelli - The FEBS journal, 2022 - Wiley Online Library
Approximately 45% of the human genome is composed of transposable elements (TEs).
Expression of these elements is tightly regulated during normal development. TEs may be …

Evolution of the ancestral mammalian karyotype and syntenic regions

J Damas, M Corbo, J Kim… - Proceedings of the …, 2022 - National Acad Sciences
Decrypting the rearrangements that drive mammalian chromosome evolution is critical to
understanding the molecular bases of speciation, adaptation, and disease susceptibility …

The HUSH complex is a gatekeeper of type I interferon through epigenetic regulation of LINE-1s

H Tunbak, R Enriquez-Gasca, CHC Tie… - Nature …, 2020 - nature.com
Abstract The Human Silencing Hub (HUSH) complex is necessary for epigenetic repression
of LINE-1 elements. We show that HUSH-depletion in human cell lines and primary …

Insights into mammalian TE diversity through the curation of 248 genome assemblies

AB Osmanski, NS Paulat, J Korstian, JR Grimshaw… - Science, 2023 - science.org
We examined transposable element (TE) content of 248 placental mammal genome
assemblies, the largest de novo TE curation effort in eukaryotes to date. We found that …

Transposable elements drive the evolution of metazoan zinc finger genes

JN Wells, NC Chang, J McCormick… - Genome …, 2023 - genome.cshlp.org
Cys2-His2 zinc finger genes (ZNFs) form the largest family of transcription factors in
metazoans. ZNF evolution is highly dynamic and characterized by the rapid expansion and …

Alzheimer's disease and related tauopathies: disorders of disrupted neuronal identity

B Frost - Trends in Neurosciences, 2023 - cell.com
Postmitotic neurons require persistently active controls to maintain terminal differentiation.
Unlike dividing cells, aberrant cell cycle activation in mature neurons causes apoptosis …

Squamate reptiles challenge paradigms of genomic repeat element evolution set by birds and mammals

GIM Pasquesi, RH Adams, DC Card… - Nature …, 2018 - nature.com
Broad paradigms of vertebrate genomic repeat element evolution have been largely shaped
by analyses of mammalian and avian genomes. Here, based on analyses of genomes …

Evolution and diversity of transposable elements in fish genomes

F Shao, M Han, Z Peng - Scientific reports, 2019 - nature.com
Transposable elements (TEs) are genomic sequences that can move, multiply, and often
form sizable fractions of vertebrate genomes. Fish belong to a unique group of vertebrates …

Piwi-interacting RNAs (piRNAs) and cancer: Emerging biological concepts and potential clinical implications

W Weng, H Li, A Goel - Biochimica et Biophysica Acta (BBA)-Reviews on …, 2019 - Elsevier
Piwi-interacting RNAs (piRNAs) are a very recently discovered class of small non-coding
RNAs (ncRNAs), with approximately 20,000 piRNA genes already identified within the …