The hygiene hypothesis in autoimmunity: the role of pathogens and commensals

JF Bach - Nature Reviews Immunology, 2018 - nature.com
The incidence of autoimmune diseases has been steadily rising. Concomitantly, the
incidence of most infectious diseases has declined. This observation gave rise to the …

T cell epitope predictions

B Peters, M Nielsen, A Sette - Annual Review of Immunology, 2020 - annualreviews.org
Throughout the body, T cells monitor MHC-bound ligands expressed on the surface of
essentially all cell types. MHC ligands that trigger a T cell immune response are referred to …

Improved prediction of MHC II antigen presentation through integration and motif deconvolution of mass spectrometry MHC eluted ligand data

B Reynisson, C Barra, S Kaabinejadian… - Journal of proteome …, 2020 - ACS Publications
Major histocompatibility complex II (MHC II) molecules play a vital role in the onset and
control of cellular immunity. In a highly selective process, MHC II presents peptides derived …

The effect of infections on susceptibility to autoimmune and allergic diseases

JF Bach - New England journal of medicine, 2002 - Mass Medical Soc
The hygiene hypothesis postulates that an environment with a high incidence of infectious
diseases protects against allergic and autoimmune diseases, whereas hygienic …

The staphylococcal enterotoxins and their relatives

P Marrack, J Kappler - Science, 1990 - science.org
Staphylococcal enterotoxins and a group of related proteins made by Streptococci cause
food poisoning and shock in man and animals. These proteins share an ability to bind to …

MHC ligands and peptide motifs: first listing

HG Rammensee, T Friede, S Stevanović - Immunogenetics, 1995 - Springer
The purpose of this article is to provide a compendium of major histocompatibility complex
(MHC) peptide motifs and MHC ligands known to date, together with a discussion of the …

NetMHCpan, a Method for Quantitative Predictions of Peptide Binding to Any HLA-A and -B Locus Protein of Known Sequence

M Nielsen, C Lundegaard, T Blicher, K Lamberth… - PloS one, 2007 - journals.plos.org
Background Binding of peptides to Major Histocompatibility Complex (MHC) molecules is
the single most selective step in the recognition of pathogens by the cellular immune system …

Several common HLA-DR types share largely overlapping peptide binding repertoires

S Southwood, J Sidney, A Kondo… - The Journal of …, 1998 - journals.aai.org
The peptide binding specificities of HLA-DRB1* 0401, DRB1* 0101, and DRB1* 0701 have
been analyzed by the use of large collections of synthetic peptides corresponding to …

Introduction of soluble protein into the class I pathway of antigen processing and presentation

MW Moore, FR Carbone, MJ Bevan - Cell, 1988 - cell.com
In order to investigate how peptides associate with class I major histocompatibility complex
(MHC) glycoproteins intracellularly, we generated cytotoxic T lymphoyctes (CTL) specific for …

Refined structure of the human histocompatibility antigen HLA-A2 at 2.6 Å resolution

MA Saper, PJ Bjorkman, DC Wiley - Journal of molecular biology, 1991 - Elsevier
The three-dimensional structure of the human histocompatibility antigen HLA-A2 was
determined at 3.5 Å resolution by a combination of isomorphous replacement and iterative …