Comprehensive review of models and methods for inferences in bio-chemical reaction networks

P Loskot, K Atitey, L Mihaylova - Frontiers in genetics, 2019 - frontiersin.org
The key processes in biological and chemical systems are described by networks of
chemical reactions. From molecular biology to biotechnology applications, computational …

Climate change impact on precipitation extremes over Indian cities: non-stationary analysis

MK Goyal, AK Gupta, S Jha, S Rakkasagi… - … Forecasting and Social …, 2022 - Elsevier
The phenomena of climate change and increase in warming conditions across the globe
causes changes in the frequency and severity of extreme weather events. The present study …

Opening the blackbox: Accelerating neural differential equations by regularizing internal solver heuristics

A Pal, Y Ma, V Shah… - … Conference on Machine …, 2021 - proceedings.mlr.press
Democratization of machine learning requires architectures that automatically adapt to new
problems. Neural Differential Equations (NDEs) have emerged as a popular modeling …

Neural network-based parameter estimation of stochastic differential equations driven by Lévy noise

X Wang, J Feng, Q Liu, Y Li, Y Xu - Physica A: Statistical Mechanics and its …, 2022 - Elsevier
In this paper, a novel parameter estimation method based on a two-stage neural network
(PENN) is proposed to carry out a joint estimation of a parameterized stochastic differential …

Low frequency global‐scale modes and its influence on rainfall extremes over India: Nonstationary and uncertainty analysis

S Jha, J Das, MK Goyal - International Journal of Climatology, 2021 - Wiley Online Library
The variability in the extreme rainfall events is of growing concern in the context of climate
change. Several high rainfall events have occurred in India in recent years and simulations …

Accuracy of parameter estimation for auto-regulatory transcriptional feedback loops from noisy data

Z Cao, R Grima - Journal of The Royal Society Interface, 2019 - royalsocietypublishing.org
Bayesian and non-Bayesian moment-based inference methods are commonly used to
estimate the parameters defining stochastic models of gene regulatory networks from noisy …

[HTML][HTML] The spatial impact of rural economic change on river water quality

C O'Donoghue, C Buckley, A Chyzheuskaya, S Green… - Land Use Policy, 2021 - Elsevier
This paper, using Ireland as a case study, examines the relationship between rural
economic activities and river water quality. The stipulation from the EU water framework …

Inference and uncertainty quantification of stochastic gene expression via synthetic models

K Öcal, MU Gutmann… - Journal of The Royal …, 2022 - royalsocietypublishing.org
Estimating uncertainty in model predictions is a central task in quantitative biology.
Biological models at the single-cell level are intrinsically stochastic and nonlinear, creating …

On Efficient Training & Inference of Neural Differential Equations

A Pal - 2023 - dspace.mit.edu
The democratization of machine learning requires architectures that automatically adapt to
new problems. Neural Differential Equations have emerged as a popular modeling …

Analysis of the Determinants of Indonesia's Exports with ASEAN Countries and Seven Trading Partner Countries Using the Gravity Model

A Jayadi, VA Retnosari - Cuadernos de Economía, 2020 - cude.es
This study aims to analyze the influence of GDP, population, distance, similarity index of
economic size, and exchange rate on Indonesian exports with ASEAN countries and 7 …