mRNA regulation by RNA modifications

WV Gilbert, S Nachtergaele - Annual Review of Biochemistry, 2023 - annualreviews.org
Chemical modifications on mRNA represent a critical layer of gene expression regulation.
Research in this area has continued to accelerate over the last decade, as more …

Role of main RNA modifications in cancer: N6-methyladenosine, 5-methylcytosine, and pseudouridine

C Xue, Q Chu, Q Zheng, S Jiang, Z Bao, Y Su… - Signal transduction and …, 2022 - nature.com
Cancer is one of the major diseases threatening human life and health worldwide.
Epigenetic modification refers to heritable changes in the genetic material without any …

MicroRNA sequence codes for small extracellular vesicle release and cellular retention

R Garcia-Martin, G Wang, BB Brandão, TM Zanotto… - Nature, 2022 - nature.com
Exosomes and other small extracellular vesicles (sEVs) provide a unique mode of cell-to-
cell communication in which microRNAs (miRNAs) produced and released from one cell are …

mRNA recognition and packaging by the human transcription–export complex

B Pacheco-Fiallos, MK Vorländer, D Riabov-Bassat… - Nature, 2023 - nature.com
Newly made mRNAs are processed and packaged into mature ribonucleoprotein complexes
(mRNPs) and are recognized by the essential transcription–export complex (TREX) for …

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins

EL Van Nostrand, GA Pratt, BA Yee, EC Wheeler… - Genome biology, 2020 - Springer
Background A critical step in uncovering rules of RNA processing is to study the in vivo
regulatory networks of RNA binding proteins (RBPs). Crosslinking and immunoprecipitation …

Denaturing purifications demonstrate that PRC2 and other widely reported chromatin proteins do not appear to bind directly to RNA in vivo

JK Guo, MR Blanco, WG Walkup, G Bonesteele… - Molecular cell, 2024 - cell.com
Summary Polycomb repressive complex 2 (PRC2) is reported to bind to many RNAs and
has become a central player in reports of how long non-coding RNAs (lncRNAs) regulate …

Polyadenylation and nuclear export of mRNAs

M Stewart - Journal of Biological Chemistry, 2019 - ASBMB
In eukaryotes, the separation of translation from transcription by the nuclear envelope
enables mRNA modifications such as capping, splicing, and polyadenylation. These …

Controlling nuclear RNA levels

M Schmid, TH Jensen - Nature Reviews Genetics, 2018 - nature.com
RNA turnover is an integral part of cellular RNA homeostasis and gene expression
regulation. Whereas the cytoplasmic control of protein-coding mRNA is often the focus of …

The m6A-methylase complex recruits TREX and regulates mRNA export

S Lesbirel, N Viphakone, M Parker, J Parker… - Scientific Reports, 2018 - nature.com
Abstract N 6-methyladenosine (m6A) is the most abundant internal modification of
eukaryotic mRNA. This modification has previously been shown to alter the export kinetics …

Structure of the human core transcription-export complex reveals a hub for multivalent interactions

T Pühringer, U Hohmann, L Fin, B Pacheco-Fiallos… - Elife, 2020 - elifesciences.org
The export of mRNA from nucleus to cytoplasm requires the conserved and essential
transcription and export (TREX) complex (THO–UAP56/DDX39B–ALYREF). TREX …