A technical review and guide to RNA fluorescence in situ hybridization
RNA-fluorescence in situ hybridization (FISH) is a powerful tool to visualize target
messenger RNA transcripts in cultured cells, tissue sections or whole-mount preparations …
messenger RNA transcripts in cultured cells, tissue sections or whole-mount preparations …
RNA: The Unsuspected Conductor in the Orchestra of Macromolecular Crowding
E Zacco, L Broglia, M Kurihara, M Monti… - Chemical …, 2024 - ACS Publications
This comprehensive Review delves into the chemical principles governing RNA-mediated
crowding events, commonly referred to as granules or biological condensates. We explore …
crowding events, commonly referred to as granules or biological condensates. We explore …
Performance comparison of exome DNA sequencing technologies
Whole exome sequencing by high-throughput sequencing of target-enriched genomic DNA
(exome-seq) has become common in basic and translational research as a means of …
(exome-seq) has become common in basic and translational research as a means of …
Experimental design, preprocessing, normalization and differential expression analysis of small RNA sequencing experiments
KP McCormick, MR Willmann, BC Meyers - Silence, 2011 - Springer
Prior to the advent of new, deep sequencing methods, small RNA (sRNA) discovery was
dependent on Sanger sequencing, which was time-consuming and limited knowledge to …
dependent on Sanger sequencing, which was time-consuming and limited knowledge to …
Multiplexed DNA Detection Using Spectrally Encoded Porous SiO2 Photonic Crystal Particles
SO Meade, MY Chen, MJ Sailor… - Analytical chemistry, 2009 - ACS Publications
A particle-based multiplexed DNA assay based on encoded porous SiO2 photonic crystal
disks is demonstrated. A “spectral barcode” is generated by electrochemical etch of a single …
disks is demonstrated. A “spectral barcode” is generated by electrochemical etch of a single …
Hybridization of genomic DNA to microarrays: a challenge for the analysis of environmental samples
The use of DNA microarrays for detection and identification of bacteria and genes of interest
from various environments (eg soil, sediment, water column…) is a major challenge for …
from various environments (eg soil, sediment, water column…) is a major challenge for …
Circadian Clocks of Synechocystis sp. Strain PCC 6803, Thermosynechococcus elongatus, Prochlorococcus spp., Trichodesmium spp. and Other Species
S Aoki, K Onai - Bacterial circadian programs, 2009 - Springer
The cyanobacterium Synechococcus elongatus PCC 7942 has been established as the
model system for studying the molecular mechanisms of the circadian clock in …
model system for studying the molecular mechanisms of the circadian clock in …
Feasibility of developing reliable gene expression modules from FFPE derived RNA profiled on Affymetrix arrays
The reliability of differential gene expression analysis on formalin-fixed, paraffin-embedded
(FFPE) expression profiles generated using Affymetrix arrays is questionable, due to the …
(FFPE) expression profiles generated using Affymetrix arrays is questionable, due to the …
Mprobe 2.0: computer-aided probe design for oligonucleotide microarray
DNA chips have proven to be effective tools in detecting gene expression levels. Compared
with DNA chips using complementary DNA as probes, oligonucleotide microarrays using …
with DNA chips using complementary DNA as probes, oligonucleotide microarrays using …
Systematic validation and atomic force microscopy of non-covalent short oligonucleotide barcode microarrays
MA Cook, CK Chan, P Jorgensen, T Ketela, D So… - PloS one, 2008 - journals.plos.org
Background Molecular barcode arrays provide a powerful means to analyze cellular
phenotypes in parallel through detection of short (20–60 base) unique sequence tags, or …
phenotypes in parallel through detection of short (20–60 base) unique sequence tags, or …