The microbiome and gut homeostasis

JY Lee, RM Tsolis, AJ Bäumler - Science, 2022 - science.org
Changes in the composition of the gut microbiota are associated with many human
diseases. So far, however, we have failed to define homeostasis or dysbiosis by the …

Bile acids as modulators of gut microbiota composition and function

AB Larabi, HLP Masson, AJ Bäumler - Gut Microbes, 2023 - Taylor & Francis
Changes in the composition of gut-associated microbial communities are associated with
many human illnesses, but the factors driving dysbiosis remain incompletely understood …

Species-and site-specific genome editing in complex bacterial communities

BE Rubin, S Diamond, BF Cress, A Crits-Christoph… - Nature …, 2022 - nature.com
Understanding microbial gene functions relies on the application of experimental genetics in
cultured microorganisms. However, the vast majority of bacteria and archaea remain …

Genomics and pathotypes of the many faces of Escherichia coli

J Geurtsen, M de Been, E Weerdenburg… - FEMS microbiology …, 2022 - academic.oup.com
Escherichia coli is the most researched microbial organism in the world. Its varied impact on
human health, consisting of commensalism, gastrointestinal disease, or extraintestinal …

Gut microbial DL-endopeptidase alleviates Crohn's disease via the NOD2 pathway

J Gao, X Zhao, S Hu, Z Huang, M Hu, S Jin, B Lu… - Cell host & …, 2022 - cell.com
The pattern-recognition receptor NOD2 senses bacterial muropeptides to regulate host
immunity and maintain homeostasis. Loss-of-function mutations in NOD2 are associated …

Oxidative stress, inflammation, gut dysbiosis: what can polyphenols do in inflammatory bowel disease?

L Li, P Peng, N Ding, W Jia, C Huang, Y Tang - Antioxidants, 2023 - mdpi.com
Inflammatory bowel disease (IBD) is a long-term, progressive, and recurrent intestinal
inflammatory disorder. The pathogenic mechanisms of IBD are multifaceted and associated …

Transferable immunoglobulin A–Coated Odoribacter splanchnicus in responders to fecal microbiota transplantation for ulcerative colitis limits colonic inflammation

SF Lima, L Gogokhia, M Viladomiu, L Chou, G Putzel… - Gastroenterology, 2022 - Elsevier
Background & Aims Fecal microbiota transplantation (FMT) is an emerging treatment
modality for ulcerative colitis (UC). Several randomized controlled trials have shown efficacy …

Gut dysbiosis induces the development of mastitis through a reduction in host anti-inflammatory enzyme activity by endotoxemia

C Zhao, X Hu, L Bao, K Wu, Y Zhao, K Xiang, S Li… - Microbiome, 2022 - Springer
Background Mounting experimental evidence has shown that the gut microbiota plays a
significant role in the pathogenesis of mastitis, and clinical investigations have found that the …

Fusobacterium nucleatum drives a pro-inflammatory intestinal microenvironment through metabolite receptor-dependent modulation of IL-17 expression

CA Brennan, SL Clay, SL Lavoie, S Bae, JK Lang… - Gut …, 2021 - Taylor & Francis
The colorectal cancer (CRC)-associated microbiota creates a pro-tumorigenic intestinal
milieu and shapes immune responses within the tumor microenvironment. However, how …

Environmental enteric dysfunction induces regulatory T cells that inhibit local CD4+ T cell responses and impair oral vaccine efficacy

A Bhattacharjee, AHP Burr, AE Overacre-Delgoffe… - Immunity, 2021 - cell.com
Environmental enteric dysfunction (EED) is a gastrointestinal inflammatory disease caused
by malnutrition and chronic infection. EED is associated with stunting in children and …