Embryonic timing, axial stem cells, chromatin dynamics, and the Hox clock

J Deschamps, D Duboule - Genes & development, 2017 - genesdev.cshlp.org
Collinear regulation of Hox genes in space and time has been an outstanding question ever
since the initial work of Ed Lewis in 1978. Here we discuss recent advances in our …

Reassessing the role of Hox genes during vertebrate development and evolution

M Mallo - Trends in Genetics, 2018 - cell.com
Since their discovery Hox genes have been at the core of the established models explaining
the development and evolution of the vertebrate body plan as well as its paired …

The sterlet sturgeon genome sequence and the mechanisms of segmental rediploidization

K Du, M Stöck, S Kneitz, C Klopp… - Nature ecology & …, 2020 - nature.com
Sturgeons seem to be frozen in time. The archaic characteristics of this ancient fish lineage
place it in a key phylogenetic position at the base of the~ 30,000 modern teleost fish …

The HoxD cluster is a dynamic and resilient TAD boundary controlling the segregation of antagonistic regulatory landscapes

E Rodríguez-Carballo, L Lopez-Delisle… - Genes & …, 2017 - genesdev.cshlp.org
The mammalian HoxD cluster lies between two topologically associating domains (TADs)
matching distinct enhancer-rich regulatory landscapes. During limb development, the …

Dynamic 3D chromatin architecture contributes to enhancer specificity and limb morphogenesis

BK Kragesteen, M Spielmann, C Paliou, V Heinrich… - Nature …, 2018 - nature.com
The regulatory specificity of enhancers and their interaction with gene promoters is thought
to be controlled by their sequence and the binding of transcription factors. By studying Pitx1 …

The three-dimensional genome: regulating gene expression during pluripotency and development

G Andrey, S Mundlos - Development, 2017 - journals.biologists.com
The precise expression of genes in time and space during embryogenesis is largely
influenced by communication between enhancers and promoters, which is propagated and …

Chromatin conformation in development and disease

I Boltsis, F Grosveld, G Giraud… - Frontiers in Cell and …, 2021 - frontiersin.org
Chromatin domains and loops are important elements of chromatin structure and dynamics,
but much remains to be learned about their exact biological role and nature. Topological …

The (unusual) heuristic value of Hox gene clusters; a matter of time?

D Duboule - Developmental biology, 2022 - Elsevier
Ever since their first report in 1984, Antennapedia-type homeobox (Hox) genes have been
involved in such a series of interesting observations, in particular due to their conserved …

Cdx and T brachyury co-activate growth signaling in the embryonic axial progenitor niche

S Amin, R Neijts, S Simmini, C van Rooijen, SC Tan… - Cell reports, 2016 - cell.com
In vertebrate embryos, anterior tissues are generated early, followed by the other axial
structures that emerge sequentially from a posterior growth zone. The genetic network …

Establishing the pattern of the vertebrate limb

C McQueen, M Towers - Development, 2020 - journals.biologists.com
The vertebrate limb continues to serve as an influential model of growth, morphogenesis
and pattern formation. With this Review, we aim to give an up-to-date picture of how a …