Computational strategies for a system-level understanding of metabolism

P Cazzaniga, C Damiani, D Besozzi, R Colombo… - Metabolites, 2014 - mdpi.com
Cell metabolism is the biochemical machinery that provides energy and building blocks to
sustain life. Understanding its fine regulation is of pivotal relevance in several fields, from …

Genetic circuit dynamics: hazard and glitch analysis

P Fontanarrosa, H Doosthosseini… - ACS synthetic …, 2020 - ACS Publications
Multiple input changes can cause unwanted switching variations, or glitches, in the output of
genetic combinational circuits. These glitches can have drastic effects if the output of the …

Effects of environmental factors on electric vehicle energy consumption: a sensitivity analysis

Z Yi, PH Bauer - IET Electrical Systems in Transportation, 2017 - Wiley Online Library
(Special section 'Design, modelling and control of electric vehicles') This study provides a
detailed deterministic and stochastic sensitivity analysis of the propulsion energy cost of …

Gene expression landscape of chronic myeloid leukemia K562 cells overexpressing the tumor suppressor gene PTPRG

G Lombardi, RV Latorre, A Mosca… - International Journal of …, 2022 - mdpi.com
This study concerns the analysis of the modulation of Chronic Myeloid Leukemia (CML) cell
model K562 transcriptome following transfection with the tumor suppressor gene encoding …

Using sensitivity analysis to identify key factors for the propagation of a plant epidemic

L Rimbaud, C Bruchou, S Dallot… - Royal Society …, 2018 - royalsocietypublishing.org
Identifying the key factors underlying the spread of a disease is an essential but challenging
prerequisite to design management strategies. To tackle this issue, we propose an approach …

Understanding the links between climate feedbacks, variability and change using a two-layer energy balance model

R Colman, S Soldatenko - Climate Dynamics, 2020 - Springer
A simple, two-layer energy balance model (EBM) is used to investigate climate variability in
Coupled Model Intercomparison Project Phase 5 (CMIP5) models and examine possible …

Accelerated global sensitivity analysis of genome-wide constraint-based metabolic models

MS Nobile, V Coelho, D Pescini, C Damiani - BMC bioinformatics, 2021 - Springer
Background Genome-wide reconstructions of metabolism opened the way to thorough
investigations of cell metabolism for health care and industrial purposes. However, the …

Spatio-temporal modelling of Leishmania infantum infection among domestic dogs: a simulation study and sensitivity analysis applied to rural Brazil

E Buckingham-Jeffery, EM Hill, S Datta, E Dilger… - Parasites & vectors, 2019 - Springer
Abstract Background The parasite Leishmania infantum causes zoonotic visceral
leishmaniasis (VL), a potentially fatal vector-borne disease of canids and humans. Zoonotic …

[PDF][PDF] Development of TEXAS-V code surrogate model for assessment of steam explosion impact in Nordic BWR

D Grishchenko, S Basso, S Galushin… - the 16th International …, 2015 - researchgate.net
Severe accident mitigation strategies in Nordic boiling water reactors (BWRs) employ core
melt cooling in a deep pool of water under the reactor pressure vessel. Corium melt …

[HTML][HTML] Stochastic Hybrid Automata with delayed transitions to model biochemical systems with delays

G Caravagna, A d'Onofrio, M Antoniotti… - Information and …, 2014 - Elsevier
To study the effects of a delayed immune-response on the growth of an immunogenic
neoplasm we introduce Stochastic Hybrid Automata with delayed transitions as a …