Performance portability study of epistasis detection using sycl on nvidia gpu
We describe the experience of converting a CUDA implementation of a high-order epistasis
detection algorithm to SYCL. The goals are for our work to be useful to application and …
detection algorithm to SYCL. The goals are for our work to be useful to application and …
Assessing opportunities of SYCL for biological sequence alignment on GPU-based systems
Bioinformatics and computational biology are two fields that have been exploiting GPUs for
more than two decades, with being CUDA the most used programming language for them …
more than two decades, with being CUDA the most used programming language for them …
Understanding performance portability of bioinformatics applications in sycl on an nvidia gpu
Our goal is to have a better understanding of performance portability of SYCL kernels on a
GPU. Toward this goal, we migrate representative kernels in bioinformatics applications from …
GPU. Toward this goal, we migrate representative kernels in bioinformatics applications from …
A comparison of two performance portability metrics
A Marowka - Concurrency and Computation: Practice and …, 2023 - Wiley Online Library
The rise in the demand for new performance portability frameworks for heterogeneous
computing systems has brought with it a number of proposals of workable metrics for …
computing systems has brought with it a number of proposals of workable metrics for …
GPU-acceleration of the distributed-memory database peptide search of mass spectrometry data
Database peptide search is the primary computational technique for identifying peptides
from the mass spectrometry (MS) data. Graphical Processing Units (GPU) computing is now …
from the mass spectrometry (MS) data. Graphical Processing Units (GPU) computing is now …
Performance portable Vlasov code with C++ parallel algorithm
This paper presents the performance portable implementation of a kinetic plasma simulation
code with C++ parallel algorithm to run across multiple CPUs and GPUs. Relying on the …
code with C++ parallel algorithm to run across multiple CPUs and GPUs. Relying on the …
Performance Evaluation of Heterogeneous GPU Programming Frameworks for Hemodynamic Simulations
Preparing for the deployment of large scientific and engineering codes on upcoming
exascale systems with GPU-dense nodes is made challenging by the unprecedented …
exascale systems with GPU-dense nodes is made challenging by the unprecedented …
A Comparison of the Performance of the Molecular Dynamics Simulation Package GROMACS Implemented in the SYCL and CUDA Programming Models
L Apanasevich, Y Kale, H Sharma… - arXiv preprint arXiv …, 2024 - arxiv.org
For many years, systems running Nvidia-based GPU architectures have dominated the
heterogeneous supercomputer landscape. However, recently GPU chipsets manufactured …
heterogeneous supercomputer landscape. However, recently GPU chipsets manufactured …
Experience Deploying Graph Applications on GPUs with SYCL
SYCL allows for deployment and use of accelerators across vendors' platforms. In this work,
we describe the experience of deploying graph analytics on vendors' GPUs using SYCL. We …
we describe the experience of deploying graph analytics on vendors' GPUs using SYCL. We …
Analyzing the Performance Portability of SYCL across CPUs, GPUs, and Hybrid Systems with Protein Database Search
M Costanzo, E Rucci, C García-Sánchez… - arXiv preprint arXiv …, 2024 - arxiv.org
The high-performance computing (HPC) landscape is undergoing rapid transformation, with
an increasing emphasis on energy-efficient and heterogeneous computing environments …
an increasing emphasis on energy-efficient and heterogeneous computing environments …