The 2022 report on the human proteome from the HUPO human proteome project

GS Omenn, L Lane, CM Overall, C Pineau… - Journal of proteome …, 2022 - ACS Publications
The 2022 Metrics of the Human Proteome from the HUPO Human Proteome Project (HPP)
show that protein expression has now been credibly detected (neXtProt PE1 level) for 18 …

Regulation of endotoxemia through the gut microbiota: The role of the Mediterranean diet and its components

J Kong, J Yang, C He, B Zhou, S Fang, M Salinas… - APMIS, 2024 - Wiley Online Library
Endotoxemia is closely related to many diseases. As the largest endotoxin reservoir in the
human body, the gut microbiota should be a key target for alleviating endotoxemia. The …

Myristoylated, alanine-rich C-kinase substrate (MARCKS) regulates toll-like receptor 4 signaling in macrophages

J Issara-Amphorn, VH Sjoelund, M Smelkinson… - Scientific Reports, 2023 - nature.com
MARCKS (myristoylated alanine-rich C-kinase substrate) is a membrane-associated protein
expressed in many cell types, including macrophages. MARCKS is functionally implicated in …

Enhancing SILCS-MC via GPU Acceleration and Ligand Conformational Optimization with Genetic and Parallel Tempering Algorithms

M Zhao, W Yu, AD MacKerell Jr - The Journal of Physical …, 2024 - ACS Publications
In the domain of computer-aided drug design, achieving precise and accurate estimates of
ligand–protein binding is paramount in the context of screening extensive drug libraries and …

Protective Effects of Companilactobacillus crustorum MN047 against Dextran Sulfate Sodium-Induced Ulcerative Colitis: A Fecal Microbiota Transplantation Study

T Wang, C Shi, S Wang, Y Zhang, S Wang… - Journal of Agricultural …, 2022 - ACS Publications
Gut microbiota dysbiosis could aggravate the development of ulcerative colitis (UC).
Companilactobacillus crustorum MN047 (CCMN) is a potential gut microbiota-regulating …

Interaction of Companilactobacillus crustorum MN047-derived bacteriocins with gut microbiota

T Wang, S Wang, S Dong, Y Zhang, M Ismael, S Wang… - Food Chemistry, 2022 - Elsevier
Companilactobacillus crustorum MN047-derived bacteriocins (CCDB) have inhibitory effects
on the growth of pathogens. In this study, a pectin/zein beads delivery system was used to …

Position-specific secondary acylation determines detection of lipid A by murine TLR4 and caspase-11

EM Harberts, D Grubaugh, DC Akuma… - Infection and …, 2022 - Am Soc Microbiol
Immune sensing of the Gram-negative bacterial membrane glycolipid lipopolysaccharide
(LPS) is both a critical component of host defense against bacterial infection and a …

Quercetin protects against Aspergillus fumigatus keratitis by reducing fungal load and inhibiting TLR-4 induced inflammatory response

J Luan, Y Zhu, J Lin, Y Zhang, Q Xu, L Zhan, X Tian… - Cytokine, 2023 - Elsevier
Purpose To investigate the antifungal and anti-inflammatory effects of quercetin in
Aspergillus fumigatus (A. fumigatus) keratitis. Methods Draize eye test was performed in …

Application of site-identification by ligand competitive saturation in computer-aided drug design

H Goel, A Hazel, W Yu, S Jo… - New Journal of Chemistry, 2022 - pubs.rsc.org
Site Identification by Ligand Competitive Saturation (SILCS) is a molecular simulation
approach that uses diverse small solutes in aqueous solution to obtain functional group …

Gram-negative bacteria and lipopolysaccharides as risk factors for the occurrence of diabetic foot

S Zhang, S Li, J Huang, X Ding, Y Qiu… - The Journal of …, 2023 - academic.oup.com
Context Imbalance of the skin microbial community could impair skin immune homeostasis
and thus trigger skin lesions. Dysbiosis of skin microbiome may be involved in the early …